Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4241741	4241761	21	2 [1]	[0] 2	BW25113_RS20970	SopA family protein

CTAATTGATAAAAATAACAATTTTTTTATCCAACTTATCGATCAGGCCTTACGATCAA  >  NZ_CP009273/4241762‑4241819 |                                                          cTAATTGATAAAAATAACAATTTTTTTATCCAACTTATCGATCAGGCCTTACGATCaa  >  1:377406/1‑58 (MQ=255) cTAATTGATAAAAATAACAATTTTTTTATCCAACTTATCGATCAGGCCTTACGATCaa  <  2:377406/58‑1 (MQ=255) |                                                          CTAATTGATAAAAATAACAATTTTTTTATCCAACTTATCGATCAGGCCTTACGATCAA  >  NZ_CP009273/4241762‑4241819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑