Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 2,258,443 | 0 | A | G | 53.8% | 8.8 / 16.3 | 13 | N368D (AAT→GAT) | setB | sugar efflux transporter SetB |
Reads supporting (aligned to +/- strand): ref base A (1/5); new base G (7/0); total (8/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.66e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTT > NZ_CP009273/2258366‑2258501 | ccacGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCtg < 1:427408/90‑1 (MQ=255) aaCACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCCAGATCTGGGATTATTACGCTGTGTTCTGGTTTTCg > 1:289077/1‑90 (MQ=255) acacTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCCTCGTCCCCCGGATCTGGGATTTTTACGCCGTGGTTTTGGTTGCgg > 2:166403/1‑89 (MQ=255) acacTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGa < 2:287197/90‑1 (MQ=255) acacTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCCGGATCTGGGATTATTACGCCGTGTTTTGGGTTgggg > 2:29291/1‑87 (MQ=255) acTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGGGGTCTGGGATTATTACGCTGGGTTTTGGTTTGCGGTg > 1:297679/1‑90 (MQ=255) acTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCAACGTCGCCGGGGTTTTGGATTATTAAGCTGTGGTTTGGGTTTCGGTg > 2:76448/1‑90 (MQ=255) cTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATgg < 1:150967/90‑1 (MQ=255) ttCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGGGATCTGGGATTATTACGCTGTGTTTTGGGTTTCGATggg > 2:224756/1‑89 (MQ=255) tcGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGc > 1:170849/1‑49 (MQ=255) tcGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGc < 2:170849/49‑1 (MQ=255) ggATCAGTGGCGGGCATCGGCGCCGGGATCTGGGATTATTACGCTGTGTTTTGGTTTTTGGTGGGGGTGATTTTTGCCCCCCTTTTTTgt > 2:283766/1‑89 (MQ=255) aTCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCtt < 1:283766/90‑1 (MQ=255) | CCACGCTCTATACCAACACTTCGCGCGTGGGCTGGATCATCGCAGGATCAGTGGCGGGCATCGTCGCCGAGATCTGGAATTATCACGCTGTGTTCTGGTTTGCGATGGTGATGATTATCGCCACTCTGTTTTGCTT > NZ_CP009273/2258366‑2258501 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |