New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NZ_CP009273 | 269666 = | NA (NA) | 36 (1.260) | 21/166 | 0.2 | 100% | intergenic (+2/+146) | ykfC/BW25113_RS01325 | reverse transcriptase domain‑containing protein/IS5‑like element IS5 family transposase |
? | NZ_CP009273 | = 671829 | 0 (0.000) | coding (175/978 nt) | ybeQ | SEL1‑like repeat protein |
AAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671744‑671918 | aagaTGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaa > 2:718391‑M2/1‑86 (MQ=255) ggCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgc < 1:251093‑M2/90‑10 (MQ=255) tGCTCATTATCTTCATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaat < 2:481368‑M2/90‑14 (MQ=255) cTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataa < 2:540453‑M2/90‑16 (MQ=255) aCGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttc > 1:482564‑M2/1‑60 (MQ=255) cGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttct < 1:839161‑M2/90‑32 (MQ=255) tCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcag < 1:231481‑M2/90‑44 (MQ=255) cGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagt < 1:46670‑M2/90‑45 (MQ=255) taCTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt < 1:112501‑M2/90‑50 (MQ=255) ttGCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattt < 2:30824‑M2/90‑55 (MQ=255) gCCCTAAGGAATACTGTGCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct < 1:231704‑M2/90‑57 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:387170‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:764899‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 2:219448‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:292115‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccga < 1:158430‑M2/90‑72 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc > 2:220707‑M2/1‑19 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 1:220707‑M2/77‑59 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:484151‑M2/72‑54 (MQ=255) gtgCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 2:484151‑M2/1‑19 (MQ=255) gCTTCACAATGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatt < 2:496472‑M2/90‑74 (MQ=255) aTGACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 2:242728‑M2/90‑82 (MQ=255) gACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg < 2:78927‑M2/90‑84 (MQ=255) gACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg < 2:733077‑M2/90‑84 (MQ=255) gACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 1:626820‑M2/60‑54 (MQ=255) gACCTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt > 2:626821‑M2/1‑7 (MQ=255) cTTGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaa < 2:547150‑M2/90‑87 (MQ=255) ttGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 2:568779‑M2/1‑3 (MQ=255) ttGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa > 1:461406‑M2/1‑3 (MQ=255) tGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:350106‑M2/90‑89 (MQ=255) tGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:449090‑M2/1‑2 (MQ=255) tGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:753381‑M2/90‑89 (MQ=255) tGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:685605‑M2/1‑2 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:599943‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:604243‑M2/90‑90 (MQ=255) gggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg < 2:270620‑M2/90‑90 (MQ=255) | AAGATGGCTTGCTCATTATCTTTATGACGGCTTTTATCCTCGGTATACTTTTGCCCTAAGGAATACTGTGCTTCACAATGACCTTGCTCAGCGGCCAGCTTCAGCCAGTAAAAGGCTTTTTCGTCGTCCGGAGAATCAATTGCGCTATCGCGATTATAATAAAACCCAACAATAT > NZ_CP009273/671744‑671918 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |