| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 70.8% | 6.8 / 18.4 | 24 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base C (0/17); total (4/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.29e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.93e-05 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATT > NZ_CP009273/3806352‑3806502 | gCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCt < 2:20917/90‑1 (MQ=255) cccTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGt < 2:814054/90‑1 (MQ=255) cTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAg > 1:521523/1‑90 (MQ=255) tGATTGCCCGTGTTGCTGCCGGAATGGCGAATGCCCTGGTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCa < 2:278720/90‑1 (MQ=255) tGCCTGTGTGGCTGCCGGACGGGCGAAGGCCCGGGTCCCGAGGTTTTGTCGGGCTACCCCTCCGCCTGTACCGGTGCTCCCCGCCATGaa < 1:653222/90‑1 (MQ=255) cggtgtTGCTGCCGAAATGGCGAATGCCCTGGTATCGACTTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGGCCCCCCCGCCATGAACca < 1:476716/88‑1 (MQ=255) ccGTTTTGCTGCGGGAATGGCGAATGCCCTGGTATCGCCGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:504750/90‑1 (MQ=255) ccGTGTTGCTGCGGGAAGGGCGAATGCCCTGGTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca < 2:521524/90‑1 (MQ=255) ccGTGTTGCTGCCGGAATGGCGAATGCCCTGTTATCGACGATTTGTCTGGCTCCCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:478561/90‑1 (MQ=255) ccGTGTTGCTGCCGGAAGGGCGAATGCCCTGGTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca < 1:306085/90‑1 (MQ=255) ccGTGTTGCGGCGGGAATGGCGAATGACCTGGTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:514842/90‑1 (MQ=255) gtgtTGCTGCCGGAAGGGCAAATGCCCTGGTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACcagc < 1:274181/90‑1 (MQ=255) gggtTGCTGCGGGAAGGGGAAAGGCCCTGGTACCGACGTTTTGTCGGGCTCCCCCTGCGCTTGTGGCCGTGCCCCCCGCCATGAACcagc < 1:735941/88‑1 (MQ=255) tGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc > 1:428066/1‑90 (MQ=255) cccTGGTATCGACGTTTTGTCGGGCTCCCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 1:38857/89‑1 (MQ=255) cTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgcag > 2:53124/1‑90 (MQ=255) gTATCGACGTTTTGTCTGGCTCCCCCTGCCCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:278341/90‑1 (MQ=255) gTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:413111/90‑1 (MQ=255) gTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:291930/90‑1 (MQ=255) gTATCGACGTTTTGTCGGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:510905/90‑1 (MQ=255) gTATCGACGATTTGTCTGGCTCCCCCTGCGCCTGTAGCCGTCCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:660565/90‑1 (MQ=255) gTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:428066/90‑1 (MQ=255) gTATCGACGATTTGTCGGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:790849/90‑1 (MQ=255) cgacgaTTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAAtt > 1:78067/1‑90 (MQ=255) | GCCCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATT > NZ_CP009273/3806352‑3806502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |