| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,214,126 | 0 | T | C | 57.1% | 4.6 / 10.7 | 14 | I425T (ATC→ACC) | ygjG | putrescine aminotransferase |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base C (0/8); total (4/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCGGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTA > NZ_CP009273/3214050‑3214214 | accGGCTATAACTTTGCCAGGGAGATGTCCCCCCAGCGCGTACGGGGGGCCGGAACCCTAAAAAACGCAAAAACGACCCGCATTAAACCg < 2:651100/88‑1 (MQ=255) gcccAGGGAGTTTTCCCCCCGGCGCGTCCGGGGGGCGGAACCGCTAAAAAACGCAAAAACGACCCGCTTTAACCCGCCactgacactgac < 1:2506/88‑1 (MQ=255) gagaTGTCCCGCCAGCGCGTACTGGGGGCCGGAACGCTAAAAAACGCAAAAACGACCCGCATTGAACCGCCACTGACACTGACCATTGaa < 2:197516/90‑1 (MQ=255) agaTTTCCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACCCAAAAACGACCCGCATTGAACCGCCACTGACACTGACCATTGAAc < 2:13265/90‑1 (MQ=255) agaTGTCCCGCCGGCGCGTACGGGGGGCGGGACCGCTCAAAACCCCAAAAACGATCCGAATTAACCCGCCACTGACACTGACCATTGAAc < 2:669986/90‑1 (MQ=255) cccggcgcGTCCGGGGGGCCGGAACCCTAAAAACCCAAAAAACGACCCGCTTTAAACCGCCACTGACACTGACCATTGAACAGTGTGAAc < 1:103439/86‑1 (MQ=255) cgtaaaaaCGATCCGCATTGACCCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTggcggc < 1:467269/86‑1 (MQ=255) cacaaaacCGACCCGCATTAACCCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTggcggc < 2:315822/86‑1 (MQ=255) caaaaaCGACCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCa < 2:188886/88‑1 (MQ=255) aaaaCGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGACCATg > 1:65901/1‑90 (MQ=255) aagcGACCCGCATTAACCCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGc < 1:620210/87‑1 (MQ=255) aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTa > 1:315822/1‑90 (MQ=255) aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTa > 2:135229/1‑90 (MQ=255) aTCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTa > 2:412859/1‑90 (MQ=255) | ATCGGCTATAACTTTGCCAGCGAGATGTTCCGCCAGCGCGTACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTA > NZ_CP009273/3214050‑3214214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |