| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1661537 = | 30 (0.570) | 3 (0.060) | 3/158 | 3.5 | 7.5% | intergenic (‑61/+64) | bioD/mlc | dethiobiotin synthase/DNA‑binding transcriptional repressor Mlc |
| ? | NZ_CP009273 | 3358915 = | 45 (0.900) | intergenic (+3/+146) | BW25113_RS16670/BW25113_RS16680 | YhcE family protein/IS5‑like element IS5 family transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTACCGGTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACA > NZ_CP009273/1661448‑1661626 | gTACCGGTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTc < 2:163967/90‑1 (MQ=255)gTACCGGTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTc < 2:48290/90‑1 (MQ=255) tACCGGTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCt > 2:1161851/1‑90 (MQ=255) ggTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGt > 1:1266512/1‑90 (MQ=255) ggTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGt > 2:1031388/1‑90 (MQ=255) taaAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGc < 1:1067199/90‑1 (MQ=255) aaCGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCt > 2:311920/1‑90 (MQ=255) ttCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAATCCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGccc < 1:1471765/90‑1 (MQ=255) ttCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGccc < 2:1283284/90‑1 (MQ=255) ttCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGccc < 2:1449570/90‑1 (MQ=255) tCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCa > 2:500476/1‑90 (MQ=255) ccGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAAt > 2:1002805/1‑90 (MQ=255) tATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTg > 2:664760/1‑90 (MQ=255) aTGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTgg > 2:545519/1‑90 (MQ=255) aTGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTgg > 2:1027970/1‑90 (MQ=255) aTGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTgg > 2:1043504/1‑90 (MQ=255) gCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTa > 1:1492009/1‑90 (MQ=255) tCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGaa > 1:558691/1‑90 (MQ=255) cacaAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAAc < 1:243603/90‑1 (MQ=255) cacaAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAAc < 2:1245314/90‑1 (MQ=255) acaAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACa > 2:112636/1‑90 (MQ=255) aaTATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGtt > 1:1291588/1‑90 (MQ=255) taAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTaaaa < 2:1492009/90‑1 (MQ=255) aaaCCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTaaaaa < 1:545519/90‑1 (MQ=255) aGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGtt > 2:216514/1‑90 (MQ=255) aGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGtt > 2:863437/1‑90 (MQ=255) ggAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCCGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAAc > 1:882574/1‑75 (MQ=255) ggAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCCGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAAc < 2:882574/75‑1 (MQ=255) aataatTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAAccc < 2:341869/90‑1 (MQ=255) ttcccTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATc > 1:862469/5‑90 (MQ=255) tCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATcaac > 1:245305/1‑90 (MQ=255) cTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATcaaca > 1:716440/1‑90 (MQ=255) | GTACCGGTAATAAAGAAACGCTTCAGCATCACTAACTCCACCGTTATGCTTCACAAATATAAACCAGGAAAATAATTAACCTTGAAAGTCTAAGTTATGCTTTCCTGGCCCAAATTGAGATAGCGCAAATTTTGGTAGAACAGTTAAAAAATGTTAACCCTGCAACAGACGAATCAACA > NZ_CP009273/1661448‑1661626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |