New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1203261	15 (0.290)	20 (0.470)	13/134	1.0	71.3%	coding (305/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	= 1205058	4 (0.090)					coding (57/540 nt)	BW25113_RS06005	phage tail protein

GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT  >  NZ_CP009273/1204972‑1205146                                                                                       |                                                                                         gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                       >  2:979984‑M2/1‑87 (MQ=255) gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                       >  2:76655‑M2/1‑87 (MQ=255)  aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                      >  2:1503193‑M2/1‑86 (MQ=255)                ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagg                                                                        <  1:544094‑M2/90‑19 (MQ=255)                          gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                              >  2:1491666‑M2/1‑62 (MQ=255)                          gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                              >  2:545243‑M2/1‑62 (MQ=255)                             agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATga                                                           <  2:1547958/90‑1 (MQ=255)                               ccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtt                                                         >  2:52340‑M2/1‑57 (MQ=255)                                    tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                    >  1:623340‑M2/1‑52 (MQ=255)                                          aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgcc                                              <  2:518706‑M2/90‑45 (MQ=255)                                            tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccat                                            >  1:183101‑M2/1‑44 (MQ=255)                                              gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatcc                                          >  2:727015‑M2/1‑42 (MQ=255)                                               cTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccg                                         <  2:527867‑M2/90‑50 (MQ=255)                                                       cACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAtt                                 >  2:634602/1‑90 (MQ=255)                                                           gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc                             >  1:527867‑M2/1‑29 (MQ=255)                                                           gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc                             >  2:776746‑M2/1‑29 (MQ=255)                                                           gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                              >  2:249695‑M2/1‑29 (MQ=255)                                                           gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                              <  1:249695‑M2/57‑29 (MQ=255)                                                             aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                           >  1:421244/1‑90 (MQ=255)                                                                             gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggc           >  2:222568‑M2/1‑11 (MQ=255)                                                                             gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggc           >  1:1359033‑M2/1‑11 (MQ=255)                                                                                aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctta        <  1:616335‑M2/90‑83 (MQ=255)                                                                                aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagcgccatccgatttgatatcgccaaacggattcttgcgggtta        <  2:1109498‑M2/90‑83 (MQ=255)                                                                                     gagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt   >  2:617397/1‑90 (MQ=255)                                                                                      agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca  <  2:141619‑M2/90‑89 (MQ=255)                                                                                      agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca  <  2:357227‑M2/90‑89 (MQ=255)                                                                                      agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca  <  2:559989‑M2/90‑89 (MQ=255)                                                                                       |                                                                                         GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT  >  NZ_CP009273/1204972‑1205146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.