| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 348602 | 33 (1.600) | 3 (0.160) | 3/156 | 1.6 | 9.1% | coding (186/1887 nt) | prpE | propionate‑‑CoA ligase |
| ? | NZ_CP009273 | = 348608 | 30 (1.590) | coding (192/1887 nt) | prpE | propionate‑‑CoA ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACGCTCGATCACAGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCACCTTTACCTTTCGTCAGCTGCATGAC > NZ_CP009273/348514‑348689 | aaaCGCTCGATCACAGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGctggctgg > 1:261679/1‑90 (MQ=255)aaaCGCTCGATCACAGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGctggctgg > 2:211434/1‑90 (MQ=255) aCGCTCGATCACAGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGgag > 2:305575/1‑90 (MQ=255) caGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCaga > 1:177160/1‑90 (MQ=255) caGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCaga > 2:63958/1‑90 (MQ=255) gCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAgg > 1:275430/1‑90 (MQ=255) aTCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAggcgc < 1:470832/90‑1 (MQ=255) cgccgTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAggcgctgg < 1:343044/90‑1 (MQ=255) gccgTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAggcgctggc < 2:483373/90‑1 (MQ=255) gTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAggcgctggcgct > 1:443664/1‑90 (MQ=255) tttGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGgcgctggcgctg < 2:425313/90‑1 (MQ=255) ttGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAAcagccagcggtcgatggcgttg > 2:307106‑M2/1‑68 (MQ=255) ttGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGtttctccagccagcggtcgatggcgttgtggcacaagttgg > 2:549474‑M1/1‑49 (MQ=255) gAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGtttctccagccagcggtcgatggcgttgtggcacaagttggttcg > 1:211434‑M1/1‑45 (MQ=255) gAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGaa < 2:98658/90‑1 (MQ=255) gAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGaa < 2:444569/90‑1 (MQ=255) gAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGaa < 1:535897/90‑1 (MQ=255) aGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAAc < 2:110156/90‑1 (MQ=255) aGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAAc < 2:182980/90‑1 (MQ=255) ggCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACa > 1:93815/1‑90 (MQ=255) cGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAAcagccagcggtcgatggcgttgtggcacaagttggttcggccttc > 1:211434‑M2/1‑45 (MQ=255) ccAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAAcagccagcggtcgatggcgttgtggcacaagttggttcggccttcacaa > 2:549474‑M2/1‑41 (MQ=255) aCTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgc < 1:467907/90‑1 (MQ=255) cTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcg < 2:265287/90‑1 (MQ=255) cTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcg < 2:425868/90‑1 (MQ=255) ttGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc < 1:254728/90‑1 (MQ=255) ttGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc < 1:348604/90‑1 (MQ=255) cacaACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCaccttt < 2:177160/90‑1 (MQ=255) caACGCCATCGACCGCTGGCTGtttctccagccagcggtcgatggcgttgtggcacaagttggttcggccttcacaaaaccaacgggcaa > 2:307106‑M1/1‑22 (MQ=255) caACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc < 2:533200/82‑1 (MQ=255) caACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc > 1:533200/1‑82 (MQ=255) caACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCacctttac > 2:418468/1‑90 (MQ=255) caACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCacctttac > 2:449306/1‑90 (MQ=255) gACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCg > 1:211546/1‑54 (MQ=255) gACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCg < 2:211546/54‑1 (MQ=255) gACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCACCTTTACCTTTCGTCAg > 2:5077/1‑90 (MQ=255) ggctggAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc < 1:522794/65‑1 (MQ=255) ggctggAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAgcgc > 2:522794/1‑65 (MQ=255) ctggAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCACCTTTACCTTTCGTCAGCTGCATGAc < 1:305575/90‑1 (MQ=255) | AAACGCTCGATCACAGCAATCCGCCGTTTGCCCGTTGGTTTTGTGAAGGCCGAACCAACTTGTGCCACAACGCCATCGACCGCTGGCTGGAGAAACAGCCAGAGGCGCTGGCGCTGATTGCCGTCTCTTCGGAAACAGAAGAAGAGCGCACCTTTACCTTTCGTCAGCTGCATGAC > NZ_CP009273/348514‑348689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |