Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1424214	1424249	36	3 [0]	[1] 2	stfR	prophage tail fiber N‑terminal domain‑containing protein

GGCAAAAACGTCCGAGACGAACGCCAGGTCTTCTGAAACGGCAGCGGGACAGAGCGCCTCGGCTGCGGCAGGCTCAAAAACAGCGGCTGC  >  NZ_CP009273/1424124‑1424213                                                                                          | ggcAAAAACGTCCGAGACGAACGCCAGGTCTTCTGAAACGGCAGCGGGACAGAGCGCCTCGGCTGCGGCAGGCTCAAAAACAGCGGCTGc  <  1:540732/90‑1 (MQ=255)                                                   agagCGCCTCGGCTGCGGCAGGCTCAAAAACAGCGGCTGc  <  1:481765/40‑1 (MQ=255)                                                   agagCGCCTCGGCTGCGGCAGGCTCAAAAACAGCGGCTGc  >  2:481765/1‑40 (MQ=255)                                                                                          | GGCAAAAACGTCCGAGACGAACGCCAGGTCTTCTGAAACGGCAGCGGGACAGAGCGCCTCGGCTGCGGCAGGCTCAAAAACAGCGGCTGC  >  NZ_CP009273/1424124‑1424213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑