| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,203,946 | 0 | T | C | 54.5% | 4.3 / 10.5 | 11 | pseudogene (1368/2001 nt) | yehQ | C69 family dipeptidase |
| Reads supporting (aligned to +/- strand): ref base T (3/2); new base C (0/6); total (3/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAG > NZ_CP009273/2203857‑2204032 | gtgCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCGt > 2:318275/1‑90 (MQ=255) gCCTGGCAAATGTTGGGCGCGCCGTTACGCCAGCGGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCGCCCCCCCGCCTGCATACgg < 2:329036/90‑1 (MQ=255) gTTGCGCGCGCCGTTCCGCCAGCCGGGCATTTTGGTTTGGCGGGAATATTTACGCCAGCGCCCCCCCGCCTGCATACGGCCTCTTAATCa < 2:306684/90‑1 (MQ=255) tGAGCGCCCCGTTACGCCAGCGGGGCATTGTGGTTTTGGGGGAATTTTTACGCCGGCGCCCCCCCGCCTGCATACGGCCTCTTAATCAgg < 1:439383/90‑1 (MQ=255) cgcCGTTCCGCCAGCCGGGCATTGTGGTTTTGGGGAAATTTTTCCGCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATa < 1:541087/90‑1 (MQ=255) ctttGTGGCTTTGGGGGAATATTTACGCCAGCGCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGt < 2:544974/88‑1 (MQ=255) gtgGTTTTGCGGGAATATTTACGCCAGCGCCCCCCCGCCTCCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCt < 2:474518/90‑1 (MQ=255) cGCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACtta > 2:548199/1‑51 (MQ=255) cGCCAGCGCCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACtta < 1:548199/51‑1 (MQ=255) gCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCt < 1:540453/78‑1 (MQ=255) gCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCt > 2:540453/1‑78 (MQ=255) gCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGAcag > 1:42456/1‑90 (MQ=255) | GTGCCGCTGTCGCCTGATGCCTGGCAAATGTTGAGCGCGCCGTTACGCCAGCCGGGCATTGTGGCTTTGCGGGAATATTTACGCCAGCGTCCCCCCGCCTGCATACGGCCTCTTAATCAGGTCGATAACTTATTTATTCTGCCGGTCGCTGAGTGTATTTCGCTCGGTTGGGACAG > NZ_CP009273/2203857‑2204032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |