| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 60.0% | 9.5 / 16.0 | 15 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| Reads supporting (aligned to +/- strand): ref base T (0/6); new base G (9/0); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.47e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGAAAG > NZ_CP009273/2290157‑2290326 | gCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAAc > 2:213142/1‑90 (MQ=255) aGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAAt < 1:78314/90‑1 (MQ=255) aGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGGAAGGGGAACGGCAACAACAACAAATGTTTCAGACTGCCg > 1:465811/1‑90 (MQ=255) ccATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCaaaa > 2:398245/1‑89 (MQ=255) cAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCa < 1:332989/90‑1 (MQ=255) gcCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAAt < 2:22846/54‑1 (MQ=255) gcCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAAt > 1:22846/1‑54 (MQ=255) ccATCACCTTCGCCAGCACAACGGCGGGCTAGGGGAACGGCAACAACATCAATTGGTCAAGACTTCCGTCCTGCAAATCGTCACGGAACa > 2:427907/1‑90 (MQ=255) ccATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAAAATCAATTGTTCAAAACCGCCGGCCTGCAAAACGTTACGGaaaa > 1:82164/1‑88 (MQ=255) aTCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGGAACAACACCAATTGTTCAAGACCGCCGTCCTGCAAATCGTCACGGGACAGt > 1:370076/1‑90 (MQ=255) ttCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTcc < 2:468804/90‑1 (MQ=255) acaACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGc < 2:106655/90‑1 (MQ=255) aaCGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCaa < 1:32284/90‑1 (MQ=255) aCGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAg > 2:526229/1‑90 (MQ=255) cAAGGGGAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGaaaa > 2:573029/1‑89 (MQ=255) | GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGAAAG > NZ_CP009273/2290157‑2290326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |