| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,623,127 | (T)5→4 | intergenic (+287/‑24) | yfgG → / → yfgH | YfgG family protein/glycine zipper 2TM domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,623,123 | 0 | T | . | 92.3% | 84.7 / 3.0 | 26 | intergenic (+283/‑28) | yfgG/yfgH | YfgG family protein/glycine zipper 2TM domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base . (13/11); total (14/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.30e-01 | |||||||||||
TGCGTGAATTTTAATAAATTTAATCTATCCCTTTATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTATTTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCTGTGGCAATGTTAGCGTCATTCACTC > NZ_CP009273/2623042‑2623205 | tGCGTGAATTTTAATAAATTTAATCTATCCCTTTATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTaa < 1:142411/90‑1 (MQ=255) aTCCCTTTATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGaa > 1:294495/1‑90 (MQ=255) tttATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTaa > 1:622800/1‑59 (MQ=255) tttATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTaa < 2:622800/59‑1 (MQ=255) tataCGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTaaa < 1:167386/90‑1 (MQ=255) ataCGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTaaaa > 2:883975/1‑90 (MQ=255) cAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTATTTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATg > 2:615270/1‑90 (MQ=255) cAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGt > 1:396746/1‑90 (MQ=255) gaTACATTTAGTGTCCTCTTTTGGTGATGTTAAATGTCTTA‑TTTTCGTAATGGGTATAACAAGGAATATGGAGAAAATTTAAAAAGTGtc > 1:733103/2‑90 (MQ=255) aTACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGtct > 1:415470/1‑90 (MQ=255) aCATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGtcttc < 1:130747/90‑1 (MQ=255) cATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTATTTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGtcttc < 1:615270/90‑1 (MQ=255) aCTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATaa > 1:759454/1‑50 (MQ=255) aCTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATaa < 2:759454/50‑1 (MQ=255) aCTTTCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCtg > 1:670708/1‑90 (MQ=255) tttCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCtgtg > 2:229897/1‑90 (MQ=255) ttCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTaa > 1:915653/1‑38 (MQ=38) ttCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTaa < 2:915653/38‑1 (MQ=38) tCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAAt > 1:696878/1‑38 (MQ=38) tCCTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAAt < 2:696878/38‑1 (MQ=38) ccTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAAtg > 2:380195/1‑38 (MQ=38) ccTCTTTTGATGATCTTAAATGTCTTA‑TTTTCGTAAtg < 1:380195/38‑1 (MQ=38) tCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACaa > 2:43134/1‑35 (MQ=255) tCTTAAATGTCTTA‑TTTTCGTAATGTGTATAACaa < 1:43134/35‑1 (MQ=255) ttAAATGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCTGTGGCAATGTTAGCGTCATTc < 1:883975/90‑1 (MQ=255) aTGTCTTA‑TTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCTGTGGCAATGTTAGCGTCATTCActc < 2:586528/90‑1 (MQ=255) | TGCGTGAATTTTAATAAATTTAATCTATCCCTTTATACGCAATACATTTACTTTCCTCTTTTGATGATCTTAAATGTCTTATTTTTCGTAATGTGTATAACAAGGAATAGTGATGAAATTTAAAAAATGTCTTCTGCCTGTGGCAATGTTAGCGTCATTCACTC > NZ_CP009273/2623042‑2623205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |