| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,713,233 | (A)5→4 | coding (652/699 nt) | tapT → | tRNA‑uridine aminocarboxypropyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,713,229 | 0 | A | . | 100.0% | 87.8 / NA | 22 | coding (648/699 nt) | tapT | tRNA‑uridine aminocarboxypropyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (11/11); total (11/11) | |||||||||||
TGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGACCGGTAT > NZ_CP009273/2713147‑2713313 | tGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGaaaacgca < 1:277043/90‑5 (MQ=255)tGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGaaaacgca < 2:124060/90‑5 (MQ=255) gATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATc > 2:65961/1‑90 (MQ=255) tGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTggg > 2:670397/1‑90 (MQ=255) tGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTggg > 2:513644/1‑90 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTa > 1:255745/1‑90 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTa > 2:490508/1‑90 (MQ=255) gCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTa < 1:65961/90‑1 (MQ=255) cGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc < 2:303594/90‑1 (MQ=255) aTACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAACCGCAACATCTGGGTAGCATcac < 2:753341/90‑1 (MQ=255) aTACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATcac < 1:223958/90‑1 (MQ=255) ccGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCAcagc < 2:325546/90‑1 (MQ=255) gggCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGa < 2:691243/90‑1 (MQ=255) gcggcggcAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAAc < 1:286102/90‑1 (MQ=255) ggcggcAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGATATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAg > 2:550945/1‑90 (MQ=255) cGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc > 2:29493/1‑63 (MQ=255) cGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATc < 1:29493/63‑1 (MQ=255) aGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTaaaa > 2:272899/1‑90 (MQ=255) gCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATcac < 2:372074/62‑1 (MQ=255) gCATTTTACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATcac > 1:372074/1‑62 (MQ=255) ttACCCGCTTTAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTc > 2:518039/1‑90 (MQ=255) tttAAAACACGCTATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACtt > 1:628575/1‑90 (MQ=255) tATCTGGCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGAcc < 2:628575/90‑1 (MQ=255) ggCAGG‑AAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGACCGGTAt < 1:74874/90‑1 (MQ=255) | TGTTAGATATGGCCGGCGATACCGGGGCGGCGGCAGGGTTAGGCGAGCATTTTACCCGCTTTAAAACACGCTATCTGGCAGGAAAAACGCAACATCTGGGTAGCATCACAGCAGAACAGTTAGAAAGCGTTTAAAATCATTCGGTCACTTCTGCGGGAGACCGGTAT > NZ_CP009273/2713147‑2713313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |