| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,417,788 | (C)6→7 | coding (69/120 nt) | BW25113_RS26130 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,417,782 | 1 | . | C | 95.0% | 59.3 / ‑2.4 | 20 | coding (75/120 nt) | BW25113_RS26130 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (4/15); total (4/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCT‑CCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGT > NZ_CP009273/1417701‑1417865 | ggTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCT‑cccccccg > 2:165693/1‑88 (MQ=18) ggTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGac < 2:635188/90‑1 (MQ=255) ggTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGac < 2:605745/90‑1 (MQ=255) cacaTCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGc < 1:636600/90‑1 (MQ=255) cacaTCAAAGCAGTCT‑‑‑‑GTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGaa < 2:108464/90‑1 (MQ=11) tCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGaa < 2:221959/90‑1 (MQ=255) aaaGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACg > 1:413694/1‑90 (MQ=255) cAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGat < 1:772387/90‑1 (MQ=255) tcagtcagTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCa < 1:165693/90‑1 (MQ=255) gtGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCg > 2:138190/1‑90 (MQ=255) gTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGaa < 1:294477/90‑1 (MQ=255) gAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg < 1:170706/90‑1 (MQ=255) aGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGAc < 2:895921/90‑1 (MQ=255) gccgccCCCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACt < 2:127853/90‑1 (MQ=17) gCCCCCGCCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACt < 2:178724/90‑1 (MQ=17) caccacCGCCTCCGGCGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTgg < 1:434580/90‑1 (MQ=255) cTCCGGCGTGGATAATGCAGCCCC‑CCCCCCGACTGGCAGACGCCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGc < 2:270838/90‑1 (MQ=18) cGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGccc < 2:413694/90‑1 (MQ=255) cGTGGATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGccc < 1:897092/90‑1 (MQ=255) ggATAATGCAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAAc > 1:778159/1‑90 (MQ=255) cAG‑CCTCCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGt > 2:645478/1‑90 (MQ=255) | GGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAG‑CCT‑CCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGT > NZ_CP009273/1417701‑1417865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |