| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1127367 | 15 (0.470) | 3 (0.110) | 3/150 | 2.5 | 21.1% | coding (58/696 nt) | flgD | flagellar hook assembly protein FlgD |
| ? | NZ_CP009273 | = 1127421 | 9 (0.320) | coding (112/696 nt) | flgD | flagellar hook assembly protein FlgD | |||||
CGCTCGGTCAATAAAGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTGAAAAACCAGGACCCGAC > NZ_CP009273/1127285‑1127455 | cGCTCGGTCAATAAAGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTc < 1:374053/90‑1 (MQ=255) cGGTCAATAAAGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTc > 1:192404/1‑90 (MQ=255) cGGTCAATAAAGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTc > 2:368837/1‑90 (MQ=255) cAATAAAGGAGAAAGCTATGTCCATTTCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACgg < 2:186051/90‑1 (MQ=255) aGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGgcagca > 1:438385/1‑90 (MQ=255) gagaAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAc < 2:887621/90‑1 (MQ=255) gagaAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAc > 1:649681/1‑90 (MQ=255) gaAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAcgc > 1:278896/1‑90 (MQ=255) aaGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAcgccg > 1:781698/1‑90 (MQ=255) ttGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCCCCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGa < 1:547279/82‑1 (MQ=255) ttGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGa > 2:547279/1‑82 (MQ=255) aaCCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAaagtcagaaaactgctttgtaaatctgc < 1:593180‑M1/72‑29 (MQ=255) aaCCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAaagtcagaaaactgctttgtaaatctgc > 2:593180‑M1/1‑44 (MQ=255) gATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTtg < 1:791780‑M2/90‑3 (MQ=255) tCCGACAAATACCGGCGTCAGTACCACCAGCAaagtcagaaaactgctttgtaaatctgcggcgttgctgcccgtgagcgaactactgct > 2:107789‑M1/1‑32 (MQ=255) tCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTtgct < 2:261339‑M2/90‑5 (MQ=255) ggCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTg > 2:142775/1‑90 (MQ=255) ggCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTg > 2:844028/1‑90 (MQ=255) cAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAcgccgc > 1:553886/1‑42 (MQ=255) cAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAAcgccgc < 2:553886/42‑1 (MQ=255) agcagTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTtgctggtggtactgacgccggtatttgtcgga > 2:107789‑M2/1‑58 (MQ=255) aGCAaagtcagaaaactgctttgtaaatctgcggcgttgctgcccgtgagcgaactactgctggtggtactgacgccggtatttgtcgga < 2:261339‑M1/90‑87 (MQ=255) cAaagtcagaaaactgctttgtaaatctgcggcgttgctgcccgtgagcgaactactgctggtggtactgacgccggtatttgtcggatc < 1:791780‑M1/90‑89 (MQ=255) | CGCTCGGTCAATAAAGGAGAAAGCTATGTCCATTGCGGTAACCACCACCGATCCGACAAATACCGGCGTCAGTACCACCAGCAGTAGTTCGCTCACGGGCAGCAACGCCGCAGATTTACAAAGCAGTTTTCTGACTTTGCTGGTGGCGCAGCTGAAAAACCAGGACCCGAC > NZ_CP009273/1127285‑1127455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |