New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3440178 =	30 (0.940)	3 (0.110)	3/150	2.5	8.6%	coding (66/306 nt)	rpsN	30S ribosomal protein S14
	?	NZ_CP009273	3440220 =	37 (1.300)					coding (24/306 nt)	rpsN	30S ribosomal protein S14
Rejected: Frequency below/above cutoff threshold.

GAGTCTGCAGCTTGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCTTACTTG  >  NZ_CP009273/3440093‑3440264                                                                                      |                                                                                       gagTCTGCAGCTTGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGa                                                                                    <  2:583485/90‑1 (MQ=255)          gCTTGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTAt                                                                           <  1:38233/90‑1 (MQ=255)             tGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGa                                                                                    <  2:400882/78‑1 (MQ=255)             tGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGa                                                                                    >  1:400882/1‑78 (MQ=255)             tGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAg                                                                        >  2:316902/1‑90 (MQ=255)                    aGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGa                                                                                    >  1:480808/1‑71 (MQ=255)                    aGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGa                                                                                    <  2:480808/71‑1 (MQ=255)                      cGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTa                                                               <  2:204084/90‑1 (MQ=255)                               tcccgttccgcaagtaaggtagggttactaaatggctaagcaatcaatgaaagcaCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTa                                                      <  1:493118‑M1/35‑1 (MQ=255)                                   gttccgcaagtaaggtagggttactaaatggctaagcaatcaatgaaagcaCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTc                                                  <  1:871885‑M1/39‑1 (MQ=255)                                          gAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCt                                           <  2:788223/90‑1 (MQ=255)                                          gAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCt                                           <  2:596644/90‑1 (MQ=255)                                                 tCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCattg                                    <  2:148583/90‑1 (MQ=255)                                                   acaTCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCattgat                                  <  1:51589/90‑1 (MQ=255)                                                    caTCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCattgatt                                 <  2:262227/90‑1 (MQ=255)                                                        agagATGATCGCTTTCAGTTCAGCGCGTTTCTCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCtt                             <  2:782913/90‑1 (MQ=255)                                                        agagATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCtt                             <  2:429764/90‑1 (MQ=255)                                                         gagaTGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTa                            <  2:137907/90‑1 (MQ=255)                                                         gagaTGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTa                            >  2:608221/1‑90 (MQ=255)                                                           gatgatCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGc                          <  2:20116/90‑1 (MQ=255)                                                              gatCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTAt                                                                           >  1:522904/1‑38 (MQ=255)                                                              gatCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCAt                       >  2:665289/1‑90 (MQ=255)                                                              gatCGCTTTCAGTTCAGCGCGCTTCGCGAAGTATTTAt                                                                           <  2:522904/38‑1 (MQ=255)                                                                   cTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGt                  >  2:831486/1‑90 (MQ=255)                                                                   cTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGt                  <  2:754354/90‑1 (MQ=255)                                                                    tttCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGc                                            <  1:828429/63‑1 (MQ=255)                                                                    tttCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGc                                            >  2:828429/1‑63 (MQ=255)                                                                    tttCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTa                 <  2:874992/90‑1 (MQ=255)                                                                         gttcagCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCt            >  2:655276/1‑90 (MQ=255)                                                                             agCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCt        >  1:31728/1‑90 (MQ=255)                                                                             agCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCt        >  2:342608/1‑90 (MQ=255)                                                                                 aagcaCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCTTACt    <  2:791990‑M1/85‑1 (MQ=255)                                                                                   tttCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCTTACTTg  >  2:579191/1‑90 (MQ=255)                                                                                      |                                                                                       GAGTCTGCAGCTTGAGAACAGCGTTCCAACGATCTTCGTCGGAAGCGTTCACATCAGAGATGATCGCTTTCAGTTCAGCGCGTTTCGCGAAGTATTTATCAGCTAAAGCTACGCGTTTTACTTCGCGTGCTTTCATTGATTGCTTAGCCATTTAGTAACCCTACCTTACTTG  >  NZ_CP009273/3440093‑3440264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.