Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3247141	3247157	17	6 [3]	[3] 4	yhaJ	DNA‑binding transcriptional regulator YhaJ

CGTAGACGTTCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATATCCGCCCGCCCCTGCTC  >  NZ_CP009273/3247051‑3247150                                                                                          |           ggTAGACGTTCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATATccgccc            <  2:229608/89‑1 (MQ=255)     gACGTTCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATACCCgcccgccc        <  1:26000/90‑1 (MQ=255)      aCGTTCATTAACGCATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATACCCGGCGCGATAACAATATCCGCCCGcccc       <  2:710059/90‑1 (MQ=255)          tCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATATccgccc            >  1:597027/1‑81 (MQ=255)          tCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATATccgccc            <  2:597027/81‑1 (MQ=255)           cATTAACGTATAGAGCTTGCGCGAGTTGATCCCCGCCGAGGACCGAAAATGCATATCCGGCGCGATAACAATATCCGCCCGCCCCTGCTc  <  2:49315/90‑1 (MQ=255)                                                                                          |           CGTAGACGTTCATTAACGTATAGAGCTTGCGCGAGTTGATCTCCGACGAGGAACGAAAATGCATATCCGGCGCGATAACAATATCCGCCCGCCCCTGCTC  >  NZ_CP009273/3247051‑3247150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑