| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 642,666 | 0 | A | C | 55.0% | 8.8 / 22.0 | 20 | G100G (GGT→GGG) | citG | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| Reads supporting (aligned to +/- strand): ref base A (8/1); new base C (0/11); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.09e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAA > NZ_CP009273/642577‑642748 | aGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCa > 1:464672/1‑90 (MQ=255)aGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCa > 1:902621/1‑90 (MQ=255) atgcccGCACAAAGCAGCCCTAAAAAAAAAACCCTGCTTTTATGCGTGTTTCCGCCCGCAGGGGCGCGGAAAATATCCCCTTCGCAAGcc < 2:8893/86‑1 (MQ=255) aTTGCCGCACATAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGcc > 2:224769/1‑90 (MQ=255) aTTGCCGCACATAGCAGCCCAAAAGAAAAAATGCTGCCTTTATGCGTTTTTCCGCCCGCAGTGGCGCGGAACATATCCCCTTCCCAAGcc < 2:893576/90‑1 (MQ=255) aTTGCCGCACATAGCAGCCCAAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGGGGCGCGGAACATATCACCTTCGCAAGcc < 2:761560/90‑1 (MQ=255) caTAGCACCCCAAAAAAAAAAATGCTCCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCCCCTTCGCAAGCCATACCAAtt < 2:541885/90‑1 (MQ=255) tAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTgg > 1:88232/1‑90 (MQ=255) gcCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTa > 1:585310/1‑90 (MQ=255) gcCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTa > 2:499096/1‑90 (MQ=255) ccccAAAAAAAAAAATGCTGCTTTTATGCGTTTTTCCGCCCGCGGGGGCGCGGACCATATCCCCTTCGCAAGCCATACCAATTGGGCGTa < 2:473979/89‑1 (MQ=255) caaaaaaaaaaaTGCTCCCTTTATGCGTTTTTACCCCCGCGGGGGCGCGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATc < 2:464672/88‑1 (MQ=255) cTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATc < 1:757125/90‑1 (MQ=255) cTAAAAAAAAAATGCTGCCTTTATGCGTGTTTCCGCCCGCGGTGGCGGGGAACATATCCCTTTCGCAAGCCATACCAATTGGGCGTAATc < 2:492574/90‑1 (MQ=255) aaaaaTGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAg > 2:434548/1‑90 (MQ=255) ccTTTATGCGTGTTTCCGCCCGCAGGGGCGCGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCt < 1:705121/90‑1 (MQ=255) tATGCGTGTTTCCGCCGGCAGGGGCGCGGAACATATCCCCTTCGAAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTg < 2:88232/90‑1 (MQ=255) tATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTg < 1:194812/90‑1 (MQ=255) ccGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTAc > 2:393727/1‑90 (MQ=255) gCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAg > 2:484771/1‑90 (MQ=255) gcgGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCaaa > 2:267258/1‑90 (MQ=255) aCATTTCCCCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCaa < 1:19902/90‑1 (MQ=255) | AGCAAACGGCCAATTGCCGCACATAGCAGCCCTAAAGAAAAAATGCTGCCTTTATGCGTGTTTACGCCCGCAGTGGCGCGGAACATATCACCTTCGCAAGCCATACCAATTGGGCGTAATCCGTGGAGTACCGCTTCTGGTGCCATTTCCGCACTACAGGCACCAAATTCAA > NZ_CP009273/642577‑642748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |