| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 766,368 | 0 | A | T | 53.3% | 3.7 / 15.0 | 15 | intergenic (+301/‑546) | mngB/cydA | mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I |
| Reads supporting (aligned to +/- strand): ref base A (3/4); new base T (8/0); total (11/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.56e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.22e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAATAATAACCCTGGGTGAGTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTT > NZ_CP009273/766285‑766455 | aaaTAATAACCCTGGGTGAGTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTa < 2:753310/90‑1 (MQ=255) gggTGAGTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGGGGATTTTTACCTTTTTTATTAATACTTAAActct > 1:156922/1‑90 (MQ=255) gAGTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGcgt < 1:139247/90‑1 (MQ=255) gTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGGGGGTTTTTTTCTTTTTTATTAATACTGAAAATCTGcgtcg > 2:47555/1‑90 (MQ=255) atTATAAGTTAACTAAATGTTAATATTGGCGGGGGGGATTTTTTCCTTTTTTTGTAATCCTGAAAATCTGCGTCGTATTAGCCAGTGAcc > 2:24121/1‑90 (MQ=255) aGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCaaaaaa < 2:846422/90‑1 (MQ=255) tAACTAAATGTTAATATTGGCGGGGGGGGTTTATTCCTTTTTTTTTAATACTGAAAATTTTCGGCGGATTAGGCAGTGGCCaaaaaaaaa > 2:557785/1‑88 (MQ=255) aaCTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAAACCTGAAAATCTTCGGCGTATTAGCCAGGGACCAAAAAAAGaa > 1:615056/1‑90 (MQ=255) aaCTAAATGTTAATATTGGCGGGGGGGGTTTATTCCTTTTTTTTTAAAACTTAAAATTTGCGGCGTATTAGTCAGTGACCaaaaaaaaaa > 2:723680/1‑90 (MQ=255) aaCTAAATGTTAATATTGGCGGGGGGGATTTTTGCCTTTTTTAGTAATACTGAAAAACTTCGTCGTATTAGCCAGTGACCAAAAAAAGaa > 2:283/1‑90 (MQ=255) aaTATTGGCGGGGGGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAAAATTAAGGTCAAc > 1:690691/1‑90 (MQ=255) tGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGc < 2:845204/90‑1 (MQ=255) tGGCGGGGGGGGTTTTTTCCTTTTTTAGTAATCCTGAAACTCTGCGTCGGATTAGCCCGTGACCAAAAAAAAAATTAAAGTCAACCGTGc > 2:703039/1‑90 (MQ=255) ggCGGGGGGGGTTTATGCCTTTTTTAGTAATCCTGAAAATCTTCGTCGGATTAGCCAGTGACCAAAAAAAAAATTAAAGTCAACCGTGCt > 2:881569/1‑90 (MQ=255) cTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCtt > 1:60031/1‑90 (MQ=255) ttattaGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTa > 2:361071/1‑56 (MQ=255) ttattaGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTa < 1:361071/56‑1 (MQ=255) ttattaGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCtttt > 1:754140/1‑90 (MQ=255) | AAATAATAACCCTGGGTGAGTTAATTATAATATAATTATAAGTTAACTAAATGTTAATATTGGCGGGGTGGATTTATGCCTTTATTAGTAATCCTGAAACTCTGCGTCGTATTAGCCAGTGACCAAAAAAAGAATTAAGGTCAACCGTGCTGTTTTTGCTTCGTCTCTTTT > NZ_CP009273/766285‑766455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |