| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,508,252 | 0 | A | G | 56.2% | ‑0.6 / 15.9 | 16 | G55G (GGA→GGG) | ydcU | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (2/5); new base G (9/0); total (11/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.80e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGA > NZ_CP009273/1508168‑1508341 | ggggctgTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCTCTGCTGACACTGTTATGGCAGGGGttttt > 1:898790/1‑89 (MQ=255) gTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTATACttt > 1:499000/1‑90 (MQ=255) ctgctgCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGAt < 1:84503/90‑1 (MQ=255) tgctgcTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGAtt < 2:499000/90‑1 (MQ=255) ccGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTTTACTTTTTACGATTTTACCATGTCg > 1:481370/1‑90 (MQ=255) gCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTTTACTTTTTACGATTTTACCATTTCGGt > 1:50307/1‑90 (MQ=255) ttGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTTTTCTTTTTTCGATTTTTCCCTGTCGGGAACGGCGGGAc > 2:66174/1‑90 (MQ=255) tGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCATGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCt < 2:353725/90‑1 (MQ=255) ttCGGCTCGCTGCTGACACTGTTATGGCAGGGGTTTTTTACTTTTTACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAat > 1:536201/1‑90 (MQ=255) gCTCGCTGCTGACACTGTTATGGCAGGGGTTTTTTTCTTTTTTCGGTTTTTCCCTTTCGGTAACGCCGGGACTGGCGCTGGGGGATATcc > 2:624481/1‑90 (MQ=255) gCTCGCTGCTGACACTGTTATGGCAGGGGGTTTATAATTTTTACGATTTCCCCATGTCGGTAAAGCCGGGACTGACGCCGGGGAATATcc > 2:531027/1‑90 (MQ=255) ctgctgACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTgcg < 2:50307/90‑1 (MQ=255) acTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTaa > 1:891422/1‑90 (MQ=255) aTGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGc < 1:357415/90‑1 (MQ=255) gCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGaa > 1:162515/1‑90 (MQ=255) aGGGGTTTTATACTTTTGACGATTTCACCATGTCGGGAACGCCGGGACTGACGCTGGCGAAAATCCGGGCGCTGTTTTATCCGGCGAAtt > 2:363451/1‑90 (MQ=255) aTTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGa < 2:806564/90‑1 (MQ=255) | GGGGCTGTTTTTACTGCTGCTTGGCCCGCTAATGTGGTTTGGCATTGTCTATTTCGGCTCGCTGCTGACACTGTTATGGCAGGGATTTTATACTTTTGACGATTTCACCATGTCGGTAACGCCGGAACTGACGCTGGCGAATATCCGTGCGCTGTTTAATCCGGCGAATTACGA > NZ_CP009273/1508168‑1508341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |