| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,909,798 | T→C | intergenic (‑7/+90) | proQ ← / ← msrC | RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,909,798 | 0 | T | C | 92.0% | 72.4 / ‑0.9 | 25 | intergenic (‑7/+90) | proQ/msrC | RNA chaperone ProQ/L‑methionine (R)‑S‑oxide reductase |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (12/11); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
CAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCG > NZ_CP009273/1909721‑1909883 | cAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAAc < 1:30472/90‑1 (MQ=255) tGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGa > 1:713676/1‑90 (MQ=255) ggggAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGAc > 2:280042/1‑90 (MQ=255) ttCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCcaaca > 2:470915/1‑90 (MQ=255) gAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTccc < 2:343586/58‑1 (MQ=255) gAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTccc > 1:343586/1‑58 (MQ=255) cgATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGaa > 1:674143/1‑90 (MQ=255) gATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAAc < 1:420283/90‑1 (MQ=255) cttcttTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCg < 2:32251/90‑1 (MQ=255) tttACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCAt > 2:619087/1‑90 (MQ=255) tGCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATaa < 1:311940/90‑1 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAg > 1:918135/1‑77 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAg < 2:918135/77‑1 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAt > 1:370902/1‑90 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAt > 1:777294/1‑90 (MQ=255) gCTATTCAACTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAAt > 2:829979/1‑90 (MQ=255) tCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGc < 1:353475/90‑1 (MQ=255) aCTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTAt > 2:92062/1‑90 (MQ=255) aCTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTAt < 2:313194/90‑1 (MQ=255) aCTTAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTAt > 1:155255/1‑90 (MQ=255) tAGGTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAg > 2:367222/1‑90 (MQ=255) ggTTGATTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTa < 1:367222/90‑1 (MQ=255) aTTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGc < 2:155255/90‑1 (MQ=255) aTTTTCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGc < 2:713676/90‑1 (MQ=255) tttCCATGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTa < 1:131542/90‑1 (MQ=255) aTGAAATTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTa < 2:854259/90‑1 (MQ=255) aaTTCCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCg < 1:491462/90‑1 (MQ=255) | CAGTGGGGAAAACGTTCGGCCAGAAACGCGATTACTTCTTTACTGCTATTCAACTTAGGTTGATTTTCCATGAAATTTCCTGATTACAACGGACGTAGCCAACAAGCGCAGGCATGAACAGGCGTCATTATAATGACGCTATCAGTAAATGCTACGTTATCCG > NZ_CP009273/1909721‑1909883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |