| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 879,010 | T→C | intergenic (‑166/‑119) | ybjG ← / → mdfA | undecaprenyl‑diphosphate phosphatase/multidrug efflux MFS transporter MdfA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 879,010 | 0 | T | C | 84.4% | 80.5 / 2.7 | 32 | intergenic (‑166/‑119) | ybjG/mdfA | undecaprenyl‑diphosphate phosphatase/multidrug efflux MFS transporter MdfA |
| Reads supporting (aligned to +/- strand): ref base T (3/2); new base C (14/13); total (17/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTA > NZ_CP009273/878923‑879094 | aaGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAg > 1:29465/1‑90 (MQ=255) aTCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACt < 1:579559/90‑1 (MQ=255) gTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGt < 1:805160/90‑1 (MQ=255) cTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCta > 2:227979/1‑81 (MQ=255) cTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCta < 1:227979/81‑1 (MQ=255) tCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGt < 2:610549/90‑1 (MQ=255) cccTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTa > 2:97671/1‑90 (MQ=255) ccTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGtaat < 2:189893/83‑1 (MQ=255) ccTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGtaat > 1:189893/1‑83 (MQ=255) tgggtgATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGttt > 1:51012/1‑90 (MQ=255) ggtgATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCa > 2:368783/1‑90 (MQ=255) gTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACaa > 1:404044/1‑90 (MQ=255) aGGTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTtc < 2:29465/90‑1 (MQ=255) ggTTAAATAAAACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTtct > 2:516973/1‑90 (MQ=255) taaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATTGTAAGaa > 2:912425/1‑49 (MQ=39) taaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAATTGTAAGaa < 1:912425/49‑1 (MQ=39) taaataaaACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGt < 2:250070/90‑1 (MQ=255) aaataaaACTTAAAGAAAGCGTAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGtt > 1:338731/1‑90 (MQ=255) aaataaaACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGaa < 2:210696/47‑1 (MQ=255) aaataaaACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGaa > 1:210696/1‑47 (MQ=255) aaataaaACTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGtt > 2:58499/1‑90 (MQ=255) aaattAAAGAAAGCGTAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGTTACAAAATTCGCTTTCTCGTTAGCTgc > 1:97381/4‑90 (MQ=255) aaCTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTgc > 1:704474/1‑90 (MQ=255) aCTTAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTgcg > 2:632359/1‑90 (MQ=255) ttAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCt < 2:218794/90‑1 (MQ=255) ttAAAGAAAGCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCt < 2:659020/90‑1 (MQ=255) aaagaaagCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCttt < 2:266874/90‑1 (MQ=255) aaagaaagCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCttt < 2:509264/90‑1 (MQ=255) aaagaaagCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCttt < 1:632359/90‑1 (MQ=255) aaagaaagCCTAGCTATACTCGTATTAA‑TGTAAGAATGTGCTTAAGCGTGGTTTCAGCTACAAAGTTCGCTTTCTAGTTAGCTGCGCttt < 2:97381/90‑1 (MQ=255) aagCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTttatta > 1:812154/1‑90 (MQ=255) aagCGCAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTttatta > 1:462681/1‑90 (MQ=255) | AAGCGGCATCGTCTTATTTCCCTCAAGCGGCCTGTTTACGGTGGGTGATTGTAACGGGCATAGGTTAAATAAAACTTAAAGAAAGCGTAGCTATACTCGTAATAA‑TGTAAGAATGTGCTTAACCGTGGTTTCAGCTACAAAATTCGCTTTCTCGTTAGCTGCGCTTTTATTA > NZ_CP009273/878923‑879094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |