| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,626,268 | A→G | pseudogene (359/1368 nt) | ydfJ ← | MHS family MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,626,268 | 0 | A | G | 94.7% | 121.3 / ‑0.6 | 38 | pseudogene (359/1368 nt) | ydfJ | MHS family MFS transporter |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (11/25); total (12/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.13e-01 | |||||||||||
GCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAT > NZ_CP009273/1626187‑1626347 | gcATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGt < 2:537163/90‑1 (MQ=255) tatTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCa < 2:148614/90‑1 (MQ=255) ttCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCaaa < 2:397925/90‑1 (MQ=255) ttCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCaaa < 1:684852/90‑1 (MQ=255) cAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACAcc < 1:562136/90‑1 (MQ=255) aGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCa < 2:6270/90‑1 (MQ=255) aTCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATc < 1:324029/90‑1 (MQ=255) aTCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATc < 1:757757/90‑1 (MQ=255) cACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAgg < 2:312856/90‑1 (MQ=255) ccGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTc < 1:743147/90‑1 (MQ=255) cGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCg > 2:768723/1‑90 (MQ=255) ggAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGAGCATAGGTCgg > 1:40357/1‑90 (MQ=255) aaTTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTaa < 2:417317/90‑1 (MQ=255) aTTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAac < 2:126006/90‑1 (MQ=255) aTTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAac < 1:889792/90‑1 (MQ=255) tCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca < 2:668575/90‑1 (MQ=255) ccTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAAtt < 2:907901/90‑1 (MQ=255) tGCACCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTaa > 1:629841/1‑90 (MQ=255) aCCCAACCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAggt < 1:369084/90‑1 (MQ=255) aCCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTAc > 1:666107/1‑90 (MQ=255) aCCCCTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTAc > 2:430641/1‑90 (MQ=255) aCCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTAc > 1:355373/1‑90 (MQ=255) ccTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAAtt < 1:288757/77‑1 (MQ=255) ccTGAATAATACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAAtt > 2:288757/1‑77 (MQ=255) aataatACGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATccc < 2:372861/90‑1 (MQ=255) taCGCAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCcatca > 1:60171/1‑90 (MQ=255) cAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTAc < 2:48004/74‑1 (MQ=255) cAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTAc > 1:48004/1‑74 (MQ=255) cAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGt > 1:38127/1‑90 (MQ=255) cAACGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGt > 2:71878/1‑90 (MQ=255) aaCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTg < 2:675721/90‑1 (MQ=255) aaCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTg < 1:309632/90‑1 (MQ=255) aCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca > 1:73455/1‑56 (MQ=255) aCGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAacaca < 2:73455/56‑1 (MQ=255) cGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAt < 1:858851/90‑1 (MQ=255) cGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAt < 1:720977/90‑1 (MQ=255) cGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAt < 1:602583/90‑1 (MQ=255) cGTCACCAGCGAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAt < 1:135454/90‑1 (MQ=255) | GCATATTCCGCCAGCATCGTACCGGCACCGGAAATTTCCGCACCTGCACCCAACCCCTGAATAATACGCAACGTCACCAGCAAGATGGGTGCAAAAACACCAATCTGTGCATAGGTCGGTAACACACCAATTAAGGTGGTACAGATCCCCATCATGGTGAT > NZ_CP009273/1626187‑1626347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |