| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,240,670 | Δ1 bp | coding (55/441 nt) | BW25113_RS06225 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,240,667 | 0 | G | . | 100.0% | 68.3 / NA | 17 | coding (52/441 nt) | BW25113_RS06225 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (7/10); total (7/10) | |||||||||||
CAGAATCCTTTTTTAATTATTGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACC > NZ_CP009273/1240578‑1240750 | caGAATCCTTTTTTAATTATTGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAATg > 1:423353/1‑90 (MQ=255) gAATCCTTTTTTAATTATTGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAATggg > 1:78122/1‑90 (MQ=255) aTCCTTTTTTAATTATTGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAATgggcg > 1:129270/1‑88 (MQ=255) atcattGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGc > 2:716194/4‑90 (MQ=255) tCGTTGTTTTTGGTGTGATTCAGAAAATAAGTATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGc < 1:689572/90‑1 (MQ=255) gttTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTgcgc < 1:50551/90‑1 (MQ=255) tGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑tt < 2:91072/90‑1 (MQ=255) tGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑tt < 2:129270/90‑1 (MQ=255) gATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTTGCTGCGGTTA‑TTTAAC‑At > 1:620862/1‑90 (MQ=255) aaataTTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATc < 2:759319/90‑1 (MQ=255) aataTTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGACGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCa < 2:533491/90‑1 (MQ=255) tatTTTAGACAGTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCAAt < 2:395072/90‑1 (MQ=255) gTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTTGGTGCGCCTT‑TTTAAA‑ATTTAGAATTGATCAATCCTTCTGGCAg > 1:59484/1‑90 (MQ=255) gTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTTGATTGGCTTATTTAAAA‑AATTAAAATTCATCAAACCTTCTGGcg > 1:503616/1‑89 (MQ=255) gTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGGTGCGCTTT‑TTTAAA‑ATTTTGAATTGATCAATCCTTCTGGCAg > 1:453203/1‑90 (MQ=255) gTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGaa > 1:736723/1‑61 (MQ=255) gTAGCCAGTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGaa < 2:736723/61‑1 (MQ=255) gTCAGGCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAACAATTTAGAATTCATCAATCCTTCTGGCAGATTAAg < 2:503616/90‑1 (MQ=255) gCGTTAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCAAAACTTCTGGCAGATTAAGCCaaaa > 1:363338/1‑90 (MQ=255) tAAAAAT‑GGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATAcc < 2:668936/90‑1 (MQ=255) | CAGAATCCTTTTTTAATTATTGTTTCGTTGTTTTTGGTGTGATTCAGAAAATAAATATTTTAGACAGTAGCCAGTCAGGCGTTAAAAATGGGGCGGATAGTGAGGCGGTTTTGGCTGCGCTTA‑TTGAAC‑ATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACC > NZ_CP009273/1240578‑1240750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |