| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,812,807 | (C)7→8 | intergenic (‑50/+55) | celF ← / ← chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,812,800 | 1 | . | C | 97.1% | 116.2 / ‑3.8 | 34 | intergenic (‑43/+62) | celF/chbR | 6‑phospho‑beta‑glucosidase/transcriptional regulator ChbR |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (18/15); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑CCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGT > NZ_CP009273/1812711‑1812879 | taGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑Tg > 1:158992/1‑90 (MQ=255) tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑ccccccc > 2:286081/1‑90 (MQ=255) tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑ccccccc > 2:515075/1‑90 (MQ=255) cccGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑cccccccc < 1:15590/90‑2 (MQ=255) cccGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑cccccccc < 1:65595/90‑2 (MQ=255) cGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑ccccccccgg < 1:702744/90‑4 (MQ=255) cGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑ccccccccgg < 1:297310/90‑4 (MQ=255) caccaATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACa < 2:205065/90‑1 (MQ=255) caccaATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACa < 2:158992/90‑1 (MQ=255) gTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAaataat < 1:97778/90‑1 (MQ=255) gTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAaataat < 1:616535/90‑1 (MQ=255) acgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCa < 1:342695/90‑1 (MQ=255) ttttAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAAc < 1:435456/90‑1 (MQ=255) ttttAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAAc < 2:447013/90‑1 (MQ=255) ttttAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAAc < 1:515075/90‑1 (MQ=255) tttAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACa > 1:380864/1‑90 (MQ=255) aTTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGAc < 1:286081/90‑1 (MQ=255) aTTTCTGGCCCATAATTTCTCCCTTCAGTACAGAATACTGAAAACTGGCCTATCTTC‑CCCCCCCGGACATAAATAATCCAGCAACAGGAc < 1:529164/90‑1 (MQ=255) tctcCCTTCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCa > 2:274269/1‑90 (MQ=255) tCAGTACAGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATaa < 1:354998/90‑1 (MQ=255) aGAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTa < 2:366042/90‑1 (MQ=255) gAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTAc > 2:451344/1‑90 (MQ=255) gAATACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTAc > 1:447428/1‑90 (MQ=255) aTACTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTg > 1:382194/1‑90 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAAc > 2:723962/1‑48 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAAc < 1:723962/48‑1 (MQ=39) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATAtg < 2:7917/60‑1 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATAtg > 1:7917/1‑60 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGAtt > 2:309704/1‑90 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGAtt > 1:475574/1‑90 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGAtt > 2:610690/1‑90 (MQ=255) cTGATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGAtt > 1:288924/1‑90 (MQ=255) gATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTaa > 1:661773/1‑90 (MQ=255) gATATCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTaa > 2:354922/1‑90 (MQ=255) atCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAAtt > 1:63969/1‑90 (MQ=255) atCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAAtt > 2:693582/1‑90 (MQ=255) tCTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTc < 2:634614/90‑1 (MQ=255) cTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGat > 1:50961/1‑50 (MQ=255) cTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGat < 2:50961/50‑1 (MQ=255) cTGGCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGAAATGTGAATTGTCAGGTATAACGACTTAATGATTAAATTCa > 1:186698/1‑90 (MQ=255) ggCATATC‑TGCCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGt > 1:487055/1‑90 (MQ=255) | TAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATC‑TG‑CCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGT > NZ_CP009273/1812711‑1812879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |