| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 964,402 | 0 | T | G | 54.5% | 8.9 / 11.9 | 11 | V194G (GTA→GGA) | lpxK | tetraacyldisaccharide 4'‑kinase |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (6/0); total (6/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGAGCGGGGCGCTTAAAGTCGGTTGATGCGGTAATCGTCAACGGCGGTGTCCCTCGCAGCGGTGAAATCCCCATGCATCTGCTGCCGGGTCAGGCGGTGAATTTACGTACCGGTAC > NZ_CP009273/964320‑964486 | gtgCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCCATGCGTGTGCGAGCGGGGGGCTTAAAGTCGGTTGATGCGGGAATCggc > 2:668932/1‑88 (MQ=255)gtgCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGGGCGAGCGGGGCGCTTAAAGTCGGTTGATGCGGGAAACGTc > 2:156538/1‑90 (MQ=255)gtgCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGGGCGGGGGGCTTAAAGTCGGTTGATGCGGGAATCGTc > 2:219147/1‑90 (MQ=255)gtgCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGAGCGGGGGGCTTAAAGTCGGTTGATGCGGGAATCggc > 2:22211/1‑88 (MQ=255) gCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGAGGGGGGCGCTTAAAATCGGTTGGTGCGGGAAACGGCaa > 2:96788/1‑90 (MQ=255) ggTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGAGCGGGGCGCTTAAAGTCGGTTGATGCGGTAATCGTCAAc < 2:245631/89‑1 (MQ=255) ccGGCGGGGCCAATGCGTGAGCGAGCGGGGCGCTTAAAGTCGGTTGATGCGGTAATCGTCAACGGCGGTGTCCCTCGCAGCGGTGAAATc < 1:599733/90‑1 (MQ=255) gcggGGCCAATGCGTGAGCGAGCGGGGGGCTTAAAGTCGGTTGGTGGGGGAAACGGCAACGGCGGGGGGCCCCGCCGCGGGGGAAAcccc > 1:428022/1‑90 (MQ=255) gcgcTTAAAGTCGGTTGATGCGGTAATCGTCAACGGGGGTGTCCCTCGCAGCGGTGAAATCCCCATGCATCTGCTGCCGGGTCAGGCGGt < 1:493718/90‑1 (MQ=255) gcTTAAAGTCGGTTGATGCGGTAATCGTCAACGGCGGTGTCCCTCGCAGCGGTGAAATCCCCATGCATCTGCTGCCGGGTCAGGCGGTGa < 2:102337/90‑1 (MQ=255) tGCGGTAATCGTCAACGGCGGTGTCCCTCGCAGCGGTGAAATCCCCATGCATCTGCTGCCGGGTCAGGCGGTGAATTTGCGTACCGGTAc < 2:190073/90‑1 (MQ=255) | GTGCGTCGCTTTGGCAATGGCTGGTGGTTGCCGGCGGGGCCAATGCGTGAGCGAGCGGGGCGCTTAAAGTCGGTTGATGCGGTAATCGTCAACGGCGGTGTCCCTCGCAGCGGTGAAATCCCCATGCATCTGCTGCCGGGTCAGGCGGTGAATTTACGTACCGGTAC > NZ_CP009273/964320‑964486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |