| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,141,214 | 0 | T | G | 70.6% | ‑0.1 / 11.4 | 17 | G20G (GGT→GGG) | yegD | molecular chaperone |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (12/0); total (12/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGC > NZ_CP009273/2141148‑2141288 | ttattTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGGCATTCGGGGGGGGGAACCGCCTTTGCTTAAAAAGGa > 1:65023/1‑90 (MQ=255) tgtTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTGATGCGGGGCGGGAAAACGCCTTTTCTAAAAAATGAAAAAGACa > 2:51225/1‑90 (MQ=255) aTTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACg < 1:673302/90‑1 (MQ=255) ttGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACgc < 1:772752/90‑1 (MQ=255) aCGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCaa < 2:397849/90‑1 (MQ=255) aCGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAACCGCATTTGCTAAAAAAGGAAAACAACAGCACGCCGCTGCCTTTaa > 2:642884/1‑90 (MQ=255) aCGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAAACGCATTTTCTAAAAAAGGAAAACAAGAGGACGCCGCCGCCTTCaa > 2:185571/1‑90 (MQ=255) gTACAGTAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGc < 1:378460/90‑1 (MQ=255) cAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGGAAAACGCATTTTCTAAAAAAAGAAAAAGACAACCCCCCGCCGCCTTCAAATCttt > 2:357272/1‑90 (MQ=255) aaCTGTTCAGTGGCGGTCATGCGTGGCGGGAAAACGCCTTTGCTAAAAAAGGAAAAAGACAACACGCTGCTGCCTTCAATGCTTTtcgcg > 2:66771/1‑90 (MQ=255) tGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCa < 1:340348/90‑1 (MQ=255) gTTCAGTGGCGGTCCTTCGTGGCCGGAAACCGCAATTGCTAAAAAACGAAAAAGAAATCACACCGCGGCCTTCCATGCTTTTCGCGCCaa > 1:441835/1‑90 (MQ=255) gTTCAGTGGCGGTCATGGGTGGCGGGAAAACGCATTTGCTAAAAAAAGGAAAAGACAACACGCTGCCGCCTTCCATTCTTTTGGCGCCaa > 1:193271/1‑90 (MQ=255) gTTCAGTGGCGGTCAAGCGTGGCGGGAAAACGCACTTTCCAAAAAAAGAAAAAGACAACACGCTGCCTCCTTCAATTCTTTgggcggcca > 1:295185/1‑86 (MQ=255) gTGGCGGTCATGCGGGACGGGAAAACGCATTTTCTAAAAAAAGAAAAAGACAGCACGCTGCTGCCTTCAAAGCTTTTTGCGCCCACGCGt > 2:146565/1‑90 (MQ=255) gCGGTCATGCGTGACGGGAAAACGCATTTTCTTAAAAAAGAAAAAAACAACACGCCCCTGCCTTCAATTATTTTTGCGCCCAcacgggga > 1:181088/1‑86 (MQ=255) ggTCATGCGTGACGGGAAAACGCATTTTTTAAAAATGGGAAAAGACAGCACGCCGCTGCCTTCAATGCTTTGCGCGCCCACGCGGGAAGc > 1:322564/1‑90 (MQ=255) | TTATTTCGTGTTTATTGGTTTTGATTACGGTACAGCAAACTGTTCAGTGGCGGTCATGCGTGACGGTAAACCGCATTTGCTAAAAATGGAAAACGACAGCACGCTGCTGCCTTCAATGCTTTGCGCGCCAACGCGTGAAGC > NZ_CP009273/2141148‑2141288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |