| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,352,635 | C→G | S164T (AGC→ACC) | yjdC ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,352,635 | 0 | C | G | 100.0% | 82.7 / NA | 24 | S164T (AGC→ACC) | yjdC | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (15/9); total (15/9) | |||||||||||
GTCAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGCTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTCCAG > NZ_CP009273/4352549‑4352720 | gTCAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTAc < 1:512806/90‑1 (MQ=255)gTCAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTAc < 1:76201/90‑1 (MQ=255) cAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGa > 1:474087/1‑90 (MQ=255) cAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGa > 2:720402/1‑90 (MQ=255) cAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCAc > 2:385325/1‑90 (MQ=255) ccaccCTGGCGGCAGCGGGCGACGCGAAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCAtt < 1:196871/90‑1 (MQ=255) caccCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTc > 1:77684/1‑90 (MQ=255) cTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCt > 1:422812/1‑90 (MQ=255) cTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCt > 1:607074/1‑90 (MQ=255) cTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCt > 1:72255/1‑90 (MQ=255) cTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCt > 1:730124/1‑90 (MQ=255) gcggcAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTaa < 2:506364/90‑1 (MQ=255) cGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCa < 2:441996/90‑1 (MQ=255) gCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGcc < 2:174486/65‑1 (MQ=255) gCCAGCCGATGTGCAGTGTCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGcc > 1:174486/1‑65 (MQ=255) gtgtCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGa > 1:322229/1‑90 (MQ=255) gtgtCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGa > 2:287693/1‑90 (MQ=255) gtCGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATc > 1:114216/1‑90 (MQ=255) cGACATCCGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGt < 2:353487/90‑1 (MQ=255) ccGCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACtt > 2:90923/1‑90 (MQ=255) gCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTcc > 2:335312/1‑90 (MQ=255) gCCTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTcc > 1:708409/1‑90 (MQ=255) cTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTCCAg < 2:65142/90‑1 (MQ=255) cTGGGTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTCCAg < 1:158893/90‑1 (MQ=255) | GTCAGGTCAATGCACCACCCTGGCGGCAGCGGGCGAAGCGCAGGATATCTTCCGCCAGCCGATGTGCAGTGTCGACATCCGCCTGGCTACGATTCACCAGCATTCGGCTTAAACAGCCTTCCAGCACCAGTTCCATCTGCTTTGCTACCATCGCCGGATCGTCAACTTCCAG > NZ_CP009273/4352549‑4352720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |