| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 899,438 | 0 | A | C | 58.8% | 7.8 / 16.2 | 17 | G162G (GGT→GGG) | ybjP | lipoprotein |
| Reads supporting (aligned to +/- strand): ref base A (6/1); new base C (0/10); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.66e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.36e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTG‑ATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCC > NZ_CP009273/899355‑899525 | cATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTG‑ATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACccgcc > 1:500057/1‑90 (MQ=255) aaaaTGCCGAACATTTTAGGGGTTTTATTGGTTG‑ATAAAGGCTTTAGCGTTTCTCGATGGACTGAGGGAGCGTCCCCGCCGTGGCATGaa < 1:370340/89‑1 (MQ=255) aCATTTTAGGGGGTTTTTTGGTTG‑ATAAAGGCGTTAGCGTTTCTCGAGGGACTGAGGGAGCGTCCCCGCCGTGGCATGAACGCTACCGcc < 1:424379/90‑1 (MQ=255) aaaTTTAGGGGGTTTTTTTGTTGTAACAGGTCGTGGGGGATTCTCAATGGACGGCGGGGCCGTCCCCGCCGTGGCATGAACGCTACCGcc < 2:40734/89‑1 (MQ=255) tttATTGGTTG‑ATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGcaca > 2:377701/1‑90 (MQ=255) ttG‑ATCAGGGGGTTAGCTTTTCTCGAGGGACTGACGGGGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 2:56184/90‑1 (MQ=255) ttG‑ATCAAGGCGTTAGCGATTCTCGACGGCCGGACGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 1:194679/90‑1 (MQ=255) ttG‑ATAAGGGCGTAAGCGATTCTCGATGGACTGAGGGAGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 1:275023/90‑1 (MQ=255) ttG‑ACCAAGGCGTTAGCTTTTCTCGATGGACTGAGGGGGCTTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 2:193474/90‑1 (MQ=255) ttG‑AACAGGGCGTTAGCGATCCTCGAGGGACTGCGGGAGGGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 2:470489/90‑1 (MQ=255) tG‑ATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATg > 1:360780/1‑90 (MQ=255) ctttAGCTTTTCTCGATGGACGGGCGGGGCGTCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAacac < 2:333706/88‑1 (MQ=255) ctcGATGGACGGAGGGAGCGCCCCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTg < 2:315513/90‑1 (MQ=255) ggAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACtt > 2:277068/1‑90 (MQ=255) gCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt > 2:265409/1‑52 (MQ=255) gCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGAt < 1:265409/52‑1 (MQ=255) gTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATcc > 1:384922/1‑90 (MQ=255) | CATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTG‑ATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCTAAGTAACGCACATCGTCGATGACCCAACACTGGCCTTCCTGAATCATTAACACTTCATCC > NZ_CP009273/899355‑899525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |