New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	51 (1.440)	29/168	0.1	NA	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	NA (NA)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein

GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360019‑360193                                                                                      |                                                                                           gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc                                                                                        >  2:626386/1‑90 (MQ=255)     gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    <  1:540400/90‑1 (MQ=255)     gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                    <  2:327165/90‑1 (MQ=255)               tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg                                                                          >  2:173396/1‑90 (MQ=255)                  cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgg                                                                       <  1:601879/90‑1 (MQ=255)                      cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggggg                                                                   >  1:244828/1‑87 (MQ=255)                        gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTcc                                                                 <  2:662244/90‑1 (MQ=255)                                       gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTcc                                                 <  1:774996/90‑1 (MQ=255)                                          ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCG‑CCCCCCCCCCCCCcgg                                              >  1:975363/1‑90 (MQ=255)                                          ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCCTG‑Cccccccccccccccg                                              >  1:642945/1‑87 (MQ=38)                                                        aaGCTGTCAAACGTGAGAATTCCGATCCCCAATTCTTGGCCGTTTATGGCGGGGGTCCTG‑CCCGCCGCCCTCCGGGCCGTTGCTTCGCaa                                <  2:860648/90‑1 (MQ=21)                                                        aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa                                <  1:936680/90‑1 (MQ=255)                                                        aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa                                <  2:203155/90‑1 (MQ=255)                                                           cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGt                             <  1:235790/90‑1 (MQ=255)                                                                       agaATTCCGTTCCCCAATCCCTGGCGGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                 <  2:117870/90‑1 (MQ=14)                                                                       agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCCCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc                 >  1:243390/1‑90 (MQ=255)                                                                            tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCCCCGCCCGTGGCTTGCCAACGTCTAAAACCCCCCCcgc             >  2:1116924/1‑89 (MQ=255)                                                                                 tCCCCAATTCCTGGCCGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCCCAACGTTCAAATCCGCTCCCGGCGGAtt       <  2:369316/90‑1 (MQ=255)                                                                                      aaTTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  2:1024866/90‑1 (MQ=35)                                                                                      aaTTCCTGGCAGTTTATGGCGGGCGCCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc  <  1:283907/90‑1 (MQ=25)                                                                                      |                                                                                           GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC  >  NZ_CP009273/360019‑360193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.