| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 215975 = | 42 (1.190) | 3 (0.100) | 3/146 | 2.7 | 8.6% | coding (107/708 nt) | tsaA | tRNA (N6‑threonylcarbamoyladenosine(37)‑N6)‑methyltransferase TrmO |
| ? | NZ_CP009273 | 216027 = | 27 (0.880) | coding (55/708 nt) | tsaA | tRNA (N6‑threonylcarbamoyladenosine(37)‑N6)‑methyltransferase TrmO | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACGGCGTCGGCCTGGTTGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGATACATAC > NZ_CP009273/215938‑216116 | aaCGGCGTCGGCCTGGTTGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtt < 2:647944/90‑1 (MQ=255)aaCGGCGTCGGCCTGGTTGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtt < 1:7830/90‑1 (MQ=255) cGGCGTCGGCCTGGTTGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtttt < 1:104933/90‑1 (MQ=255) tGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGgcgagc < 2:235547/90‑1 (MQ=255) gTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGgcgagcg < 1:411277/90‑1 (MQ=255) tAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGgcgagcga < 1:936813/90‑1 (MQ=255) aGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtttt > 1:260466/1‑68 (MQ=255) aGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtttt < 2:260466/68‑1 (MQ=255) aGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAAc > 1:225048/1‑90 (MQ=255) aGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAAc > 2:179783/1‑90 (MQ=255) aGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAAc > 1:892410/1‑90 (MQ=255) gCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACg > 1:164984/1‑90 (MQ=255) gCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACg > 2:716232/1‑90 (MQ=255) agaTGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTAtt > 1:923549/1‑90 (MQ=255) agaTGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTAtt > 1:643220/1‑90 (MQ=255) gCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCt < 1:83662/90‑1 (MQ=255) gCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCt < 1:626199/90‑1 (MQ=255) AGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCg > 1:1022328‑M1/1‑90 (MQ=255) GTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGa < 2:988509‑M1/90‑1 (MQ=255) TCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAAc < 2:30029‑M1/90‑1 (MQ=255) GCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTg > 2:923549‑M1/1‑90 (MQ=255) GCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTg > 2:643220‑M1/1‑90 (MQ=255) ggCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtt > 1:207538/1‑42 (MQ=255) ggCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACtt < 2:207538/42‑1 (MQ=255) tACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTc < 2:171533/90‑1 (MQ=255) ccAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGc < 1:775606/90‑1 (MQ=255) ccAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGc < 1:389672/90‑1 (MQ=255) aGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCg < 2:626417/90‑1 (MQ=255) ctggtaaaaagcgccaacggcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGa < 2:394092‑M2/45‑1 (MQ=255) ctggtaaaaagcgccaacggcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGa > 1:394092‑M2/27‑71 (MQ=255) ggtaaaaagcgccaacggcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAAt > 1:259504‑M2/25‑90 (MQ=255) gcgGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAgcgc > 2:1093577/1‑90 (MQ=255) gcgGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAgcgc < 1:981328/90‑1 (MQ=255) gAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGa < 2:133839/90‑1 (MQ=255) gAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAAAGTTAAGCGCAGa < 2:164984/90‑1 (MQ=255) acggcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAAc < 2:1047186‑M2/80‑1 (MQ=255) acggcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAAc < 2:184720‑M2/80‑1 (MQ=255) gcgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGa < 1:354699‑M2/83‑1 (MQ=255) cgaactTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGat < 1:496540‑M2/84‑1 (MQ=255) ctTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGatacat > 1:703960‑M2/3‑90 (MQ=255) tTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGatacata < 1:360973‑M2/89‑1 (MQ=255) tttCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGatacatac < 1:290027/90‑1 (MQ=255) | AACGGCGTCGGCCTGGTTGTAGGGAGCAATGAGATGCAGTTCGCCGTTGGCGCTTTTTACCAGACCTGGCTGGCGCGGAACGGCGAACTTTTCTTTATAGGGCGAGCGAATAACGCCTATTTGCTCGAACTGGAAACTGCTCATTTCGCCGTAATGTTAAGCGCAGAACCGATACATAC > NZ_CP009273/215938‑216116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |