| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 1040657 = | 20 (0.570) | 4 (0.130) | 4/150 | 2.4 | 15.1% | coding (603/1140 nt) | gfcE | polysaccharide export protein |
| ? | NZ_CP009273 | 1040766 = | 27 (0.850) | coding (494/1140 nt) | gfcE | polysaccharide export protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGATGGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGC > NZ_CP009273/1040677‑1040851 | tgatgGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGa > 1:1076262/1‑90 (MQ=255) tgGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGc < 1:435767/90‑1 (MQ=255) gtacgtcaccggcgaagtcagcaaatcgggtcagcagccgattaccaatattcctctgaccatcatggatgcgattaacgccgcgACGCt < 2:226490‑M2/5‑1 (MQ=255) ggTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCt > 1:243873/1‑90 (MQ=255) ggTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCt > 1:89735/1‑90 (MQ=255) gagGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACAt > 2:625868/1‑90 (MQ=255) atatTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACt > 2:313982/1‑90 (MQ=255) ttGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGc < 2:133007/90‑1 (MQ=255) aagtcagcaaatcgggtcagcagccgattaccaatattcctctgaccatcatggatgcgattaacgccgcgACGCTGACATCGACTTGCg < 1:372536‑M2/19‑1 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 2:87399/1‑90 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 1:849314/1‑90 (MQ=255) ggTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCgg > 1:636365/1‑90 (MQ=255) agtcagcaaatcgggtcagcagccgattaccaatattcctctgaccatcatggatgcgattaacgccgcgACGCTGACATCGACTTGCgg < 1:441930‑M2/20‑1 (MQ=255) tAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGc < 1:402821/90‑1 (MQ=255) tAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGc < 2:243873/90‑1 (MQ=255) tCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCttt > 2:1086944/1‑90 (MQ=255) ctgctgACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAAt < 2:1128979/90‑1 (MQ=255) gggtcagcagccgattaccaatattcctctgaccatcatggatgcgattaacgccgcgACGCTGACATCGACTTGCGGGCTTTCAATGAc < 1:757988‑M2/32‑1 (MQ=255) cTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgc < 2:791404/90‑1 (MQ=255) cTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgc < 2:1076262/90‑1 (MQ=255) cTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgc < 1:313982/90‑1 (MQ=255) cTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGAcgc < 2:210983/90‑1 (MQ=255) aCTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCt < 1:862690/90‑1 (MQ=255) aCGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTg < 1:625868/90‑1 (MQ=255) cGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGc < 2:482369/90‑1 (MQ=255) cTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCt < 1:732407/90‑1 (MQ=255) ttttGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTaa < 2:369676/73‑1 (MQ=255) ttttGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTaa > 1:369676/1‑73 (MQ=255) ttttGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTgg > 2:71237/1‑90 (MQ=255) tGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTa < 2:347818/90‑1 (MQ=255) tCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAgtgt > 1:396235/1‑90 (MQ=255) ccgcgACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAAtct < 1:1108953‑M2/55‑1 (MQ=255) ccgcgACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAAtct > 2:1108953‑M2/6‑60 (MQ=255) cgcgACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGc < 1:71237‑M2/86‑1 (MQ=255) aCGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTcc > 2:1106898/1‑82 (MQ=255) aCGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTcc < 1:795658/82‑1 (MQ=255) aCGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTcc > 2:795658/1‑82 (MQ=255) aCGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTcc < 1:1106898/82‑1 (MQ=255) | TGATGGTCAGAGGAATATTGGTAATCGGCTGCTGACCCGATTTGCTGACTTCGCCGGTGACGTACGCTTTTTGCGATCGGAACGCCGCGACGCTGACATCGACTTGCGGGCTTTCAATGACTGAATCGAGACGCGCTGTAATCTCGTTGCGTACCTGGGTAAGTGTTTTCCCGGC > NZ_CP009273/1040677‑1040851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |