New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3615349 =	NA (NA)	3 (0.090)	3/152	2.8	100%	coding (2798/4236 nt)	rhsB	rhs element protein RhsB
	?	NZ_CP009273	3615372 =	0 (0.000)					coding (2821/4236 nt)	rhsB	rhs element protein RhsB

CCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACG  >  NZ_CP009273/3615283‑3615428                                                                                          |                                                         ctcatcatccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgc                                                          >  2:893546‑M2/90‑90 (MQ=255) ctcatcatccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgc                                                          <  1:767476‑M2/1‑1 (MQ=255) ctcatcatccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgc                                                          >  1:1127045‑M2/90‑90 (MQ=255)      gatccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCAc                                                     >  1:752001‑M2/85‑90 (MQ=255)      catccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCAc                                                     >  2:951178‑M2/85‑90 (MQ=255)      catccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCAc                                                     <  2:428725‑M2/6‑1 (MQ=255)      catccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCAc                                                     >  1:5262‑M2/85‑90 (MQ=255)       atccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACg                                                    <  2:385979‑M2/7‑1 (MQ=255)       atccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACg                                                    <  1:521907‑M2/7‑1 (MQ=255)       atccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACg                                                    <  1:256234‑M2/7‑1 (MQ=255)        tccgtgcggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACgg                                                   <  2:743612‑M2/8‑1 (MQ=255)               ggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACgg                                                   >  1:806083‑M2/76‑83 (MQ=255)               ggataaccccttccgggatgaggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACgg                                                   <  2:806083‑M2/8‑1 (MQ=255)                            cgggaggcggccggtttcctctcccagcctgccgtgacggtcatcccggtaaagatagtgcgCGTCACGGCAGGCTGACAGAGAAAACCg                               <  2:509045‑M2/28‑1 (MQ=255)                                    ggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACgg                                                   <  2:487774‑M2/8‑1 (MQ=255)                                    ggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACgg                                                   >  1:487774‑M2/55‑62 (MQ=255)                                    ggtcggttttctctgtcagcctgccgtgacggtcataccggtaaagatagtgcgCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATc                       <  2:943698‑M2/36‑1 (MQ=255)                                                         tgccgtgacggtcataccggtaaagatagtgcgCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACg  <  1:922515‑M2/57‑1 (MQ=255)                                                                                          |                                                         CCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGTGACGCGCACTATCTTTACCGGTATGACCGTCACGGCAGGCTGACAGAGAAAACCGACCTCATCCCGGAAGGGGTTATCCGCACG  >  NZ_CP009273/3615283‑3615428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.