| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 52 (1.520) | 29/170 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
TTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360021‑360193 | ttGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCt < 2:211935/90‑1 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:341884/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:794340/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:819380/90‑1 (MQ=255) ccAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 1:356807/90‑1 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggc < 1:504953/90‑1 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggg > 1:226122/1‑89 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑t > 1:596513/1‑90 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTAGCAGTTTATggcgg > 1:335544/1‑86 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTAGCAGTTTATggcgg < 2:335544/86‑1 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑gcccgccc > 2:547273/1‑90 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCa < 2:55658/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCa < 2:562932/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCa < 1:954284/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCa < 1:635792/90‑1 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCa < 2:377965/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GCCCGccccccccccc > 2:750180/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GCCCGccccccccccc > 2:503903/1‑89 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GCCTGCccccccccccccccg > 1:740024/1‑87 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GCCTGCCCGCCCCCCCCCcgg > 2:243912/1‑90 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑GCCTGCCCCCCCCCCCCCcgg > 2:266073/1‑90 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑GCCTGCCCCCCCCCCCCCcgg > 2:7173/1‑90 (MQ=38) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑CCCTTCCCCCCCCCCCCCcgg > 2:769863/1‑90 (MQ=38) cTCCGATGATAAGCTGTCAACCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGt < 1:601657/90‑1 (MQ=255) aatcTGTCAAACATGAGAATCCCGTCCCCCCAACCCTGGCAGTTTATGGCGGGCG‑GCCTGCCCGCATCCCTCCGGGCCGTTGCTTCGCaa < 1:645332/87‑1 (MQ=14) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:795634/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:581163/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:477244/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:179916/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGG‑GCCCCCCCCCCCCCCCCCCGGCCGCTGCTTCGCCACGTTCCAAAcctgtc > 2:908815/1‑86 (MQ=12) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 2:740024/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCCCCCCCCCCCCGGCCGTTTCTTTGCAACCTTCCAAAcccccc > 2:212961/1‑86 (MQ=17) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 2:724417/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:764797/90‑1 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGCCCCGGCCCCCCCCCCCCCGGGGCG‑TGTTTTGCAACGTTCATATCCCCTTCCCCCGGa > 2:620247/1‑90 (MQ=9) gATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCCCCCCCCCCCCGGCCGGTGCTTTGCAACGTTTAAAACCGCTCCccgcggg > 2:374872/1‑89 (MQ=14) tCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:307989/90‑1 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 1:171866/90‑1 (MQ=38) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:822459/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:598142/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:764897/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:716766/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:882165/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:93457/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:114234/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:64931/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:145133/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:248548/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:907822/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:279954/90‑1 (MQ=35) | TTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCG‑TCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360021‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |