| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4446779 | 36 (1.070) | 12 (0.320) +GTGGCAG |
4/130 | 2.1 | 24.2% | coding (1178/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
| ? | NZ_CP009273 | 4446780 = | 39 (0.960) | coding (1179/1374 nt) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase | |||||
TGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATAT > NZ_CP009273/4446695‑4446857 | ggggatctgcaaagacgatctggcaccttcattaggtcgtgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcaggtggc > 1:955858‑M2/86‑90 (MQ=255) gacgatctggcaccttcattaggtcgtgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcagGTGGCAGgtggcagaagt > 2:768880‑M2/73‑90 (MQ=255) gATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGcc < 1:461031/90‑1 (MQ=255) gATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGcc > 2:934249/1‑90 (MQ=255) gCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGtt < 1:906420/90‑1 (MQ=255) gCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGtt < 1:320435/90‑1 (MQ=255) cattaggtcgtgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcagGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGtt < 2:108622‑M2/34‑1 (MQ=255) ttCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGcc > 2:994259/1‑90 (MQ=255) ttCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGcc > 2:1014564/1‑90 (MQ=255) ttCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGcc < 1:166381/90‑1 (MQ=255) ttCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGGGGCAGAAGTGGCAGAAGCCTGCGTTCAGcc > 1:327910/1‑90 (MQ=255) ttCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGGGGCAGAAGTGGCAGAAGCCTGCGTTCAGcc > 1:792419/1‑90 (MQ=255) gtgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcagGTGGCAGGTGGCAGAAGTGGCAGAAGGCTGCGTTCAGCCTGca > 1:524100‑M2/48‑90 (MQ=255) gtgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcagGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGca > 1:663560‑M2/48‑90 (MQ=255) tgccgatgaagtcttcctgctgcaaccggcgcatattccgtggcagGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGcac < 1:34101‑M2/44‑1 (MQ=255) tAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGcac < 1:299480/90‑1 (MQ=255) tAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGcac < 1:1081767/90‑1 (MQ=255) tAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGcac < 1:1055404/90‑1 (MQ=255) gTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACt < 2:609060/90‑1 (MQ=255) tCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGAGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTg > 2:937777/1‑90 (MQ=255) cGTGCCGATGAAGTCTTCCCGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTgg < 2:180432/90‑1 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTg < 2:822926/81‑1 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTg > 1:822926/1‑81 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTggg > 1:1012302/1‑89 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 1:100741/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 1:1099747/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 2:744297/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 2:536673/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 1:161937/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 2:1106827/1‑90 (MQ=255) gTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGa > 2:1054678/1‑90 (MQ=255) tGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGc > 2:123224/1‑81 (MQ=255) tGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGc < 1:123224/81‑1 (MQ=255) gAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGAt < 1:1054678/90‑1 (MQ=255) aaGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGAtg < 1:336468/90‑1 (MQ=255) cTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGa > 2:937628/1‑90 (MQ=255) ttCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGAt < 1:744297/90‑1 (MQ=255) ccTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATAc < 1:124477/90‑1 (MQ=255) gctgcAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCt < 1:1107373/90‑1 (MQ=255) tgcAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGGGTGGCGATGTGGATACGCTgg > 1:796340/1‑90 (MQ=255) cAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCa < 2:394006/90‑1 (MQ=255) cAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCa < 1:765912/90‑1 (MQ=255) ggCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGatat < 1:934249/90‑1 (MQ=255) cGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGtt < 2:927231/35‑1 (MQ=255) cGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGtt > 1:927231/1‑35 (MQ=255) | TGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATAT > NZ_CP009273/4446695‑4446857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |