| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,074,924 | 0 | A | G | 53.3% | 5.6 / 17.6 | 15 | D55G (GAT→GGT) | putP | sodium/proline symporter PutP |
| Reads supporting (aligned to +/- strand): ref base A (0/7); new base G (8/0); total (8/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.55e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AACGAAAAACTTTGACGACTATATTCTGGGCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATCGCCATTGGCC > NZ_CP009273/1074844‑1075004 | aaCGAAAAACTTTGACGACTATATTCTGGGCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGGGGGGCGGGGATGAgggg > 2:262484/1‑90 (MQ=255) gAAAAACTTTGACGACTATATTCTGGGCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGTGCGTCGGATATGAGCggctg < 2:687380/90‑1 (MQ=255) aaaCTTTGACGACTATATTCTGGGCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGTGCGTCGGATATGAGCggctggct < 2:363898/90‑1 (MQ=255) gggCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGGGGGGCGGGTATGAGGGGGTGGGTGTTTATGGGGGTTGCgggggg > 2:674047/1‑88 (MQ=255) cGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGGGCGGCGGGTATGAGCGGGGGGGTGTTTAT‑TGGGGTGGCGGGGG‑CG‑Gt > 2:418649/1‑90 (MQ=255) gTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGGGGGGCGGGTATGAGGGGGTGGCTGTTTAT‑TGGGGTGGCGGGGG‑CT‑Ggtt > 2:114405/1‑90 (MQ=255) tGGGCCATTCGTGACGGCATTATCGGCGGGGGGGTTGGGGTTTGGAGGGTGGCTGTTTAT‑GGGGGTGGCTGGCG‑CTGGTTTTTTTTTCCg > 2:185610/1‑90 (MQ=255) tGGGCCATTCGTGACGGCATTATCGGCGGGGGGGTCGGGGATGAGGGGGGGGGGGGTGAT‑GGGGGTGTCGGGGG‑GG‑GGTTTTTTTTTCgg > 1:55064/1‑90 (MQ=255) tGGGCCATTCGTGACGGCATTATCGGCGGGGGGGGCGGGTATGAGGGGGTGGGTGTTTAT‑GGGGGTGGCGGGGGCCG‑GTTTTTTTTTCCg > 2:185194/1‑90 (MQ=255) tGGGCCATTCGTGACGGCATTATCGGCGGGGGGGGCGGGGATTAGGGGGTGGGTGTTTTT‑GGGGGTGGCGGGGG‑GC‑GTTTTTTTTTTCgg > 2:478864/1‑90 (MQ=255) ttATCGGCGGGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATc < 2:104935/90‑1 (MQ=255) ttATCGGCGGGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATc < 2:499794/90‑1 (MQ=255) ggcggGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATCGCCAt < 2:232095/90‑1 (MQ=255) gcggGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATCGCCAtt < 1:418649/90‑1 (MQ=255) gTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATCGCCATTGGcc < 1:262484/90‑1 (MQ=255) | AACGAAAAACTTTGACGACTATATTCTGGGCGGTCGTAGTCTTGGGCCATTCGTGACGGCATTATCGGCGGGTGCGTCGGATATGAGCGGCTGGCTGTTAAT‑GGGGTTGCCGGGCG‑CT‑GTTTTTCTTTCCGGGATTTCCGAAAGCTGGATCGCCATTGGCC > NZ_CP009273/1074844‑1075004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |