| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,380,341 | 0 | G | A | 60.0% | ‑0.8 / 19.6 | 26 | intergenic (+31/‑72) | yfbL/yfbM | M28 family metallopeptidase/YfbM family protein |
| Reads supporting (aligned to +/- strand): ref base G (3/7); new base A (15/0); total (19/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.01e-05 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTA > NZ_CP009273/2380272‑2380429 | gTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAACGACATGCACattttttttt > 1:364779/1‑90 (MQ=255) gATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTccc < 1:120045/90‑1 (MQ=255) gATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTccc < 2:1047358/90‑1 (MQ=255) tGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCCGAAAAAAAGACAAGCACAATTTTTTTTTCCTc > 1:886643/1‑90 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCCGAAAAAACGACAAGCACATTTTTTTTTtccccc > 1:856204/1‑87 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCCGAAAAAAAGACAAGCACATTTTTTTTTTCCTCa > 1:217111/1‑90 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAGCGACATGGACATTTTTTTTTTCCTcc > 1:369024/1‑89 (MQ=255) ggTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAAAAAAAAAGATAAACACAATTTTTTTTTCCTcc > 1:1267879/1‑89 (MQ=255) gtgtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAAAAAAAAAGACAAGCAAATTTTTTTTTTTCTCAt > 1:692769/1‑90 (MQ=255) gtTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAGGCATGCACATTTTTTTTTTCCTCctct > 1:516704/1‑90 (MQ=255) ttATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAGACATGCACATTTTTTTTTTTCTCctctt > 1:119690/1‑89 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCTGAAAAAAAGACAAGCAAAATTTTTTTTTTCTCCTCTGttttttt > 2:28964/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCCGAAAAAAAGACAAGCACAATTTTTTTTTTCTCCTCtttttttaa > 2:442801/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAGACAAGCACATTTTTTTTTTTCTCATTTGTTTTTAg > 1:966558/1‑90 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAGAAAAGAACATTTTTTTTTTTCTCCTCTGtttttat > 2:881828/1‑87 (MQ=255) tttGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAGAAAAACAAATTTTTTTTTTTCTCCTCtttttttat > 2:893369/1‑87 (MQ=255) acaacaGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGaaa < 2:119690/90‑1 (MQ=255) aGTAAATAATAAAAATTTCTCGAGGCGGGCTCGCGAAAAA‑CGAAAAGAACATTTTATTTTTCCCCCTCTGTTTTTAGATGCGAAACACGa > 2:356206/1‑90 (MQ=255) aGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGa < 1:601527/90‑1 (MQ=255) aaaTAATAAAAATTTCTCGAGGCGGG‑GCCAGAAAAAAAAACAAGCACAATTTTTTTTTCCTCCTCTGTTTTTAGAAGGGAAAAAAGaaaa > 2:297752/1‑89 (MQ=255) ataaAAATTTCTCGAGGCGGG‑TCTAGAAAAAACGACATGCACATTTTATTTTTCCTCATCTGTTTTTAGATGCGAAAAATGAAATTTaaa > 1:509939/1‑89 (MQ=255) aTTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACggagga < 2:1117443/90‑1 (MQ=255) aTTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACggagga < 2:1267879/90‑1 (MQ=255) ggCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAaaataaat < 2:49897/90‑1 (MQ=255) aaGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCt > 1:581382/1‑90 (MQ=255) aGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTa > 1:208518/1‑90 (MQ=255) | GTGGATGGTGTTATAACTTTGTTATACAACAGTAAATAATAAAAATTTCTCGAGGCGGG‑TCCAGAAAAAGCGACATGCACATTTTATTTTCCCTCATCTGTTTTAAGATGCGAAACATGAAATTCAACGGAGGAAAAATAAATGGGAATGATTGGCTA > NZ_CP009273/2380272‑2380429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |