Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1213547	1213567	21	3 [1]	[1] 2	pdeG	cyclic diguanylate phosphodiesterase

TAATATTTATTCTGTTAATCGCCTGCGCCGCTGCCTTCCTGCTTGATAGATATTTCAATAAAAGCGCAACGCCTGAAGAGATCCTGCGACGGGCAATA  >  NZ_CP009273/1213457‑1213554                                                                                          |         tAATATTTATTCTGTTAATCGCCTGCGCCGCTGCCTTCCTGCTTGATAGATATTTCAATAAAAGCGCAACGCCTGAAGAGATCCTGCGAc          <  1:286843/90‑1 (MQ=255) tAATATTTATTCTGTTAATCGCCTGCGCCGCTGCCTTCCTGCTTGATAGATATTTCAATAAAAGCGCAACGCCTGAAGAGATCCTGCGAc          <  1:461710/90‑1 (MQ=255)         attCTGTTAATCGCCTGCGCCGCTGCCTTCCTGCTTGATAGATATTTCAATAAAAGCGCAACGCCTGAAGAGATCCTGCGACGGGCaata  <  2:273258/90‑1 (MQ=255)                                                                                          |         TAATATTTATTCTGTTAATCGCCTGCGCCGCTGCCTTCCTGCTTGATAGATATTTCAATAAAAGCGCAACGCCTGAAGAGATCCTGCGACGGGCAATA  >  NZ_CP009273/1213457‑1213554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑