| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 500,939 | 0 | T | A | 53.3% | 9.4 / 20.0 | 15 | R190R (CGT→CGA) | ushA | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| Reads supporting (aligned to +/- strand): ref base T (6/1); new base A (0/8); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.40e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGGATCTGAAAATTGCCGTTATTGGGCTGACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCGCGGCGACCCATATGGGGC > NZ_CP009273/500850‑501027 | cAGGATCTGAAAATTGCCGTTATTGGGCTGACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGt > 2:469910/1‑90 (MQ=255)cAGGATCTGAAAATTGCCGTTATTGGGCTGACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGt > 2:10956/1‑90 (MQ=255) gTTATTGGGCTGACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATgaagcg > 2:88191/1‑90 (MQ=255) gACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGAt > 2:232483/1‑90 (MQ=255) cGATGACACAGAAAAAATTGGTACCCCGGAATCCTTCACTGATATCGAATTTCGAAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGa < 1:196236/90‑1 (MQ=255) gATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAg > 2:153976/1‑90 (MQ=255) aTGACAAAGCAAAATGTGGCACCCCGGAATCCTAAACGAATTTCTTTTTCCGAACCCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGc < 2:320024/90‑1 (MQ=255) gACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTg > 1:221001/1‑90 (MQ=255) acaGAAAAAATTGGAACCCCGAAATCCTTCACTGATACCAAATTTCGAAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCaa < 1:65794/90‑1 (MQ=255) aTTGGAACCCCGAAATACTCCACTGATATCAAATTTCGAAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGaa < 1:208483/90‑1 (MQ=255) ttGGAACCCCGAAATACTTCACTAATATAGATTTTCGAAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGaaa < 1:133765/90‑1 (MQ=255) ccGGAATTCTTCATTGTTACCATTTTTCAAAACCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGAc < 2:408405/90‑1 (MQ=255) cTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATtattat > 1:341340/1‑90 (MQ=255) ttaatatCAATTTTCGAAACCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCgcgg < 1:415745/87‑1 (MQ=255) cTGAAATCAATTTTCGAACGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCgcgg < 1:415746/90‑1 (MQ=255) ttCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCGCGGCGACCCATATgg > 1:17986/1‑90 (MQ=255) gTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCGCGGCGACCCATATGGGGc < 1:232483/90‑1 (MQ=255) | CAGGATCTGAAAATTGCCGTTATTGGGCTGACAACCGATGACACAGCAAAAATTGGTAACCCGGAATACTTCACTGATATCGAATTTCGTAAGCCCGCCGATGAAGCGAAGCTGGTGATTCAGGAGCTGCAACAGACAGAAAAGCCAGACATTATTATCGCGGCGACCCATATGGGGC > NZ_CP009273/500850‑501027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |