| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,869,539 | G→C | P99A (CCG→GCG) | nimR ← | DNA‑binding transcriptional regulator NimR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,869,539 | 0 | G | C | 100.0% | 57.4 / NA | 18 | P99A (CCG→GCG) | nimR | DNA‑binding transcriptional regulator NimR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (10/8); total (10/8) | |||||||||||
CTGAGTCGTCGTCCTGTTTGCCAGGGTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGGCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTATGTTCCACCCCGCCCGGT > NZ_CP009273/1869459‑1869624 | cTGAGTCGTCGTCCTGTTTGCCAGGGTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCAc > 1:255267/1‑90 (MQ=255) tcCTGTTTGCCAGGGTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGtt < 1:389233/90‑1 (MQ=255) gTTTGCCAGGGTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGAt > 1:71167/1‑90 (MQ=255) gggTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATaaacagaa > 1:356376/1‑90 (MQ=255) taattCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTc < 1:63017/90‑1 (MQ=255) aattCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCa > 1:1468/1‑90 (MQ=255) ccGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCAtt < 2:356376/90‑1 (MQ=255) ccGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCAtt < 1:454511/90‑1 (MQ=255) cGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTa > 1:257839/1‑90 (MQ=255) ggCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAg > 2:222072/1‑90 (MQ=255) gATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCAtt > 1:307195/1‑77 (MQ=255) gATATTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCAtt < 2:307195/77‑1 (MQ=255) atatTTTCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAACCAGAAAACAGACTTCAGCATTAGCTGTTACTTGAt < 2:257062/90‑1 (MQ=255) ttttCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGc < 1:64266/90‑1 (MQ=255) ttCAATGTGCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTa < 1:457638/90‑1 (MQ=255) gCAACATGTTGTCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTATGTTCCAc > 2:256752/1‑90 (MQ=255) ttgtCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTATGTTCCACcccgcccg > 2:257773/1‑90 (MQ=255) gtCGCCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTATGTTCCACCCCGCCCGGt > 1:219215/1‑90 (MQ=255) | CTGAGTCGTCGTCCTGTTTGCCAGGGTTAAAATTAATTCCCGGCATAAGGGCGATATTTTCAATGTGCAACATGTTGTCGGCATTGTCACTGCGCTGGGTTCGATAAACAGAAAACAGAGTTCAGCATTAGCTGTTACTTGATTGCTATGTTCCACCCCGCCCGGT > NZ_CP009273/1869459‑1869624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |