| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,961,177 | C→G | A40P (GCC→CCC) | cheZ ← | protein phosphatase CheZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,961,177 | 0 | C | G | 100.0% | 61.6 / NA | 19 | A40P (GCC→CCC) | cheZ | protein phosphatase CheZ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (11/8); total (11/8) | |||||||||||
CGCTCCGCAGCCTGGGCGGTCATCTGCACAACATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGC > NZ_CP009273/1961092‑1961262 | cGCTCCGCAGCCTGGGCGGTCATCTGCACAACATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGa > 1:475203/1‑90 (MQ=255) cTCCGCAGCCTGGGCGGTCATCTGCACAACATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATc < 1:80418/90‑1 (MQ=255) tCATCTGCACAACATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCa > 2:30986/1‑90 (MQ=255) aTAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCgcag < 2:165710/90‑1 (MQ=255) aaCGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATAcgcg > 1:211225/1‑90 (MQ=255) aaCGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATAcgcg > 2:210249/1‑90 (MQ=255) aaCGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATAcgcg > 1:349100/1‑90 (MQ=255) cGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTc < 2:168621/90‑1 (MQ=255) gATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCa > 1:24928/1‑90 (MQ=255) aTCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAg < 1:268455/90‑1 (MQ=255) tCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAgg > 2:285481/1‑90 (MQ=255) tCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAgg > 2:319014/1‑90 (MQ=255) gATGGCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATgcgcgc < 2:475203/90‑1 (MQ=255) ggCTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAAt > 1:145547/1‑90 (MQ=255) cTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATa > 1:282606/1‑62 (MQ=255) cTTCCGCCGCTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATa < 2:282606/62‑1 (MQ=255) cgcTTCGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGcc < 1:387553/90‑1 (MQ=255) cGGCAATGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTg < 2:439241/90‑1 (MQ=255) aTGGGCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGc > 2:467184/1‑90 (MQ=255) | CGCTCCGCAGCCTGGGCGGTCATCTGCACAACATAGTACAAACGATCGCGCGCATCGGGGATGGCTTCCGCCGCTTCGGCAATGGCCTGATCCAGCCCCAGTTCCCGCAAACTGTCGCGCAGCATACGCGTCAGGCTGCCGATGCGCGCAATGATATCGCCAGCTGAATGC > NZ_CP009273/1961092‑1961262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |