| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 700,996 | 0 | C | A | 63.6% | ‑6.4 / 16.6 | 22 | P533T (CCG→ACG) | nagE | PTS N‑acetyl glucosamine transporter subunit IIABC |
| Reads supporting (aligned to +/- strand): ref base C (1/7); new base A (14/0); total (15/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.87e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTG > NZ_CP009273/700921‑701073 | gATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtc < 2:1148224/90‑1 (MQ=255) tGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACGACAGATAAAAacgt > 2:351275/1‑90 (MQ=255) aCTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCAcc < 2:1004205/90‑1 (MQ=255) cTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACGACAGATAAAAACGTCGTATCACCa > 2:1207263/1‑90 (MQ=255) aTCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCg < 2:981349/90‑1 (MQ=255) aGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACGACAGATAAAAACGTCGTATCACCAGCCGCAg > 2:448188/1‑90 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGGAAACCACAAAAAAAAAACTCGGATCACCACCCGCAGGGGCa > 1:699129/1‑90 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAACGTCGTATCACCAGCCGCCGGGACa > 2:1209030/1‑90 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACCACACATAAAAACGCCGTATTACCCACCGCCGGGGCa > 2:971547/1‑90 (MQ=255) gAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGGGGAAACGACAGATAAAAACGTCGGATTACCAACCCCCGGGGCAAACggg > 1:200180/1‑88 (MQ=255) gAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGGGAAAACGACAGATAAAAACGTCGTATCACCAGCCCCCGGGGCAATCGTg > 1:165193/1‑90 (MQ=255) gAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGGGAAAACGAAAGATAAAAAAGTCGCATCCCCAGCCGCAGGGACAAACGTg > 1:628919/1‑90 (MQ=255) gAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGGGAAAACCACAGATAAAAAAGTCGTATCACCCGCCGCAGGGGCAAACGTg > 1:1023186/1‑90 (MQ=255) aaGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACGACAGATAAAATCGTCGTATCACCAGCCGCAGGGGCAATCGTGa > 2:429647/1‑90 (MQ=255) cATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGaaaa < 2:367367/90‑1 (MQ=255) cATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGaaaa < 2:443957/90‑1 (MQ=255) cATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACGACAGATAAAAACGTCGTATCACCAGCCGCAGGGGCAATCGTGgaaa > 2:246008/1‑90 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAACCACAGATAAAAACGTCGTATTACCCGCCGCCGGGGCAAACGTGGAAAACTTTaaaa > 1:352383/1‑88 (MQ=255) tggcGGTGTGGCGGTGAAACCGACAGATAAAACCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGtt < 1:407168/87‑1 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCt < 2:902565/90‑1 (MQ=255) gtgtGGCGGTGAAAACGACAGATAAAAACGTCGTATCACCAGCCGCAGGGGCAAACGTGAAAAACTTTAACACCAACCACCCGGTCTGcc > 1:499475/1‑90 (MQ=255) gtgGCGGTGAAAACGACAGAAAAAAATGTCGTATCACCAGCCGCAGGGACAAACGTGAAAAACTTTAACACCAACCACCCGGTCTGCCTg > 2:1233024/1‑90 (MQ=255) | GATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTG > NZ_CP009273/700921‑701073 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |