| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,527,926 | 0 | A | C | 54.2% | 19.5 / 30.3 | 24 | G219G (GGT→GGG) | nanM | N‑acetylneuraminate epimerase |
| Reads supporting (aligned to +/- strand): ref base A (8/3); new base C (0/13); total (8/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.24e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.28e-05 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATC > NZ_CP009273/4527841‑4528006 | aaTTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCtt < 1:39310/90‑1 (MQ=255)aaTTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCtt < 1:725364/90‑1 (MQ=255) aaTCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑ccgccg > 1:602412/1‑90 (MQ=255) gTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAg > 1:1065954/1‑90 (MQ=255) gTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAg > 2:818252/1‑90 (MQ=255) ttaaaaTACGGCACCCGTTCGCAACCCTGTTTTGGCTTCGCC‑ATTAAAAAGCCAGT‑TTTTATCCCCTTTATTCACAA‑‑CCGCCGCACCAGc < 2:332206/87‑1 (MQ=255) ttCAAATACGGCATCCTTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGT‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGc < 2:24423/90‑1 (MQ=255) taaaaTCCGGCTCCCTTCCGCAATCCTGTTTTGGTTTCGCC‑ATAAATAAGCCAGT‑TTTTATCCCCTTTATTCACAA‑‑CCGCCGCACCAGcc < 2:1164196/88‑1 (MQ=255) taaaaTACGCCATCCTTCCGAAACCCTGTTTTGGCTTCCCC‑ATTAATAAGCCAGT‑TTTTATCCCTTTTATCCACAA‑‑CCGCCGCACCAGcc < 2:1008868/88‑1 (MQ=255) aTACGGCCCCCGTCCGAAACCCTGGTTTGGCTCCCCC‑ATTAATAAGCCAGG‑TTTTATCCCTTTTATTCACAA‑‑CCGCCGCACCAGCCGTTc < 2:310926/90‑1 (MQ=255) tACGCCTTCCTTCCGCAATCCTGTTTGGGCTCCCCC‑TTAAAAAAGCCGGT‑TTTTACCCCTTTTATTCACAA‑‑CCGCCGCACCAGCCGTTcc < 2:613660/90‑1 (MQ=255) cgccATCCGTCCCCACTCCTGTTTTGGTTCCCCC‑ATTAAAAAGCCAGT‑TTTTATCCCCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGt < 2:121101/87‑1 (MQ=255) aTCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCa > 1:343831/1‑90 (MQ=255) aTCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGc > 1:514367/1‑90 (MQ=255) tcttgTTTTGCTTCCCC‑AATAAAAAACCCGGTTTTTACCCCTTTTATCCACAC‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGcc < 1:235195/86‑1 (MQ=255) tgTTTTGCTTCCCCAATTAAAAAGCCGGG‑TTTTACCCCTTTTATCCACAC‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGc < 2:960158/89‑1 (MQ=255) cGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCAtt > 2:1170737/1‑90 (MQ=255) cGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCAtt > 1:800964/1‑90 (MQ=255) cctttAAAAAGCCGGG‑TTTTATCCCCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGc < 2:2998/87‑1 (MQ=255) aTTAATAAGCCAGT‑TTTTATCCCCTTTTTTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCtg < 2:343831/90‑1 (MQ=255) cAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGa > 2:70991/1‑90 (MQ=255) ggtttttttCCCCTTTTTTCCCAAACCCGCCGCCCCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAggg < 1:868634/87‑1 (MQ=255) gtttttATCCCTTTTTTCCACAC‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATc < 2:852277/88‑1 (MQ=255) gtttttACCCCTTTTATCCACAC‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATc < 1:1161058/88‑1 (MQ=255) | AATTATTACCGGTGAAATCAAGTTCAAATACGGCATCCGTTCGCAATCCTGGTTTGGCTTCGCC‑ATTAATAAGCCAGG‑TTTTATCACCTTTATTCACAA‑‑CCGCCGCACCAGCCGTTCCGTACCAGGGCGATTCGCCAGCGTAACTCCATTGCTGTGTTGAGGGATC > NZ_CP009273/4527841‑4528006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |