New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1972751	0 (0.000)	25 (1.760)	17/168	0.1	100%	intergenic (‑297/‑483)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
	?	NZ_CP009273	= 2283592	NA (NA)					intergenic (‑68/‑387)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP

TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838                                                                                      |                                                                                        tCGTCACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTCAATTACTTAAggaa                                                                                     <  1:212850‑M1/90‑5 (MQ=255)   gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATaaa                                                                                   <  1:65368‑M2/11‑1 (MQ=255)       cTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcg                                                                               >  2:70548‑M1/1‑80 (MQ=255)              cacaTACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                        >  1:379587‑M1/1‑73 (MQ=255)              cacaTACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                        >  2:70962‑M1/1‑73 (MQ=255)                  tACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    <  2:74565‑M1/90‑22 (MQ=255)                          gggggggcTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                            >  2:274854‑M1/2‑61 (MQ=255)                                gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                        <  1:155947‑M1/72‑18 (MQ=255)                                gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                        >  2:155947‑M1/1‑55 (MQ=255)                                             ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         <  2:225757‑M1/90‑49 (MQ=255)                                               aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                       <  1:34843‑M1/90‑51 (MQ=255)                                                gccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                      >  1:54322‑M2/35‑90 (MQ=255)                                                atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc                                      >  2:275360‑M1/1‑39 (MQ=255)                                                atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaa                                                                                     <  1:80697‑M1/43‑5 (MQ=255)                                                atGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaa                                                                                     >  2:80697‑M1/1‑39 (MQ=255)                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    >  1:237977‑M1/1‑37 (MQ=255)                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    <  1:14139‑M1/90‑54 (MQ=255)                                                     tGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    <  1:31195‑M1/87‑54 (MQ=255)                                                     tGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    >  2:31195‑M1/1‑34 (MQ=255)                                                       aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                               <  1:70962‑M1/90‑59 (MQ=255)                                                       aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    >  2:84538‑M1/1‑32 (MQ=255)                                                       aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                    <  1:84538‑M1/85‑54 (MQ=255)                                                         aatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc                             <  1:211962‑M2/65‑1 (MQ=255)                                                            gATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                          >  2:232367‑M1/1‑27 (MQ=255)                                                                         acTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca             <  1:275360‑M1/90‑77 (MQ=255)                                                                                  cTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         <  2:299912‑M1/53‑49 (MQ=255)                                                                                  cTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         >  1:299912‑M1/1‑5 (MQ=255)                                                                                    tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct  <  2:338372‑M1/90‑88 (MQ=255)                                                                                      |                                                                                        TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.