Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2010376	2010381	6	2 [0]	[1] 2	fliI	flagellar protein export ATPase FliI

TTTCGGCAGAAGGGCTGCAAAGCGGCAAGCAGTTGCCGCTCGGTCC  >  NZ_CP009273/2010330‑2010375                                              | tttCGGCAGAAGGGCTGCAAAGCGGCAAGCAGTTGCCGCTCGGTcc  <  1:203488/46‑1 (MQ=255) tttCGGCAGAAGGGCTGCAAAGCGGCAAGCAGTTGCCGCTCGGTcc  >  2:203488/1‑46 (MQ=255)                                              | TTTCGGCAGAAGGGCTGCAAAGCGGCAAGCAGTTGCCGCTCGGTCC  >  NZ_CP009273/2010330‑2010375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑