Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2145569	2145614	46	2 [1]	[1] 3	pphC	protein‑serine/threonine phosphatase PphC

AGTGCGTCATGTTGGCATATTCACCCGCCATCGGCGTGAGAGGCAATTGCAGACCGTGACCCAAATCTACCACCACGCCGCCATCGCCAATCTGCATAATCAAGGTGCCGTC  >  NZ_CP009273/2145479‑2145590                                                                                          |                       aGTGCGTCATGTTGGCATATTCACCCGCCATCGGCGTGAGAGGCAATTGCAGACCGTGACCCAAATCTACCACCACGCCGCCATCGCCaa                        <  1:194070/90‑1 (MQ=255)                       aCCCGCCATCGGCGTGAGAGGCAATTGCAGACCGTGACCCAAATCTACCACCACGCCGCCATCGCCAATCTGCATAATCAAGGTGCCGTc  >  1:128930/1‑90 (MQ=255)                                                                                          |                       AGTGCGTCATGTTGGCATATTCACCCGCCATCGGCGTGAGAGGCAATTGCAGACCGTGACCCAAATCTACCACCACGCCGCCATCGCCAATCTGCATAATCAAGGTGCCGTC  >  NZ_CP009273/2145479‑2145590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑