Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	540615	540673	59	2 [1]	[1] 2	allC	allantoate deiminase

ATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCT  >  NZ_CP009273/540653‑540763                      |                                                                                          aTAAAGTAACCGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATgtgt                       <  1:125692/90‑1 (MQ=255)                      aCCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGtct  <  1:188934/90‑1 (MQ=255)                      |                                                                                          ATAAAGTAAACGGGTCATCCCACCCGCTGGGTCAGCGCCAAAAGAGGAAAGCCAGGGCAGCGTTTCTTCTATAGCTTGACGGAAATGTGTAATCATAAGAAAGTCCTGTCT  >  NZ_CP009273/540653‑540763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑