| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 792,847 | 0 | G | T | 60.0% | 0.3 / 10.1 | 10 | V280F (GTT→TTT) | modC | molybdenum ABC transporter ATP‑binding protein ModC |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base T (0/6); total (3/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCTGGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAG > NZ_CP009273/792758‑792936 | cgctggcgctggGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATg > 1:201216/1‑90 (MQ=255) cgctggGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTtctc < 1:154477/90‑1 (MQ=255) cATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAAccg > 1:139943/1‑90 (MQ=255) aTTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAAccgc > 2:42911/1‑90 (MQ=255) aaGCGGGACGAACCGCTGCAAGCTGCGCTACGTACCCGCATTCGGGCTTCCGTTTTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGc < 1:354888/90‑1 (MQ=255) cTGGACAACCCGCTGCAAGCTGCGTTACGTTCCCGCATTCGGGCTTCCGTTTTTTCTCTGTTTTTAAAACCGCCGCAGCAAACCAGCAtt < 1:42911/90‑1 (MQ=255) ccGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTa > 2:237432/1‑90 (MQ=255) cggCAAGCTGCGCTACGTACCCCCATTCGGGTTTCCGTTTTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTg < 1:237432/88‑1 (MQ=255) cgcTCCGTACCCGAATTCAGGCTTCCGTTTTTTCTCTGTTTTAACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAg < 1:279433/90‑1 (MQ=255) cgcTACTTATCCGCATTCAGGCTTCCGTTTTTTCTCTGTTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAg < 2:318210/90‑1 (MQ=255) ttCCGATTTTTCTGTGTTTTTAAAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACaa < 1:36604/90‑1 (MQ=255) gTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAg > 1:309786/1‑90 (MQ=255) | CGCTGGCGCTGGGCGATCAGCATTTGTGGGTCAATAAGCTGGACGAACCGCTGCAAGCTGCGCTACGTATCCGCATTCAGGCTTCCGATGTTTCTCTGGTTTTACAACCGCCGCAGCAAACCAGCATTCGTAACGTATTGCGGGCAAAAGTTGTTAATAGTTATGACGACAACGGCCAG > NZ_CP009273/792758‑792936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |