| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,982,555 | T→C | F232S (TTC→TCC) | yqeI → | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,982,555 | 0 | T | C | 100.0% | 30.8 / NA | 11 | F232S (TTC→TCC) | yqeI | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (5/6); total (5/6) | |||||||||||
GTTCGATAAATATAAAACACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTTCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATAAAAACTATAACCAACATGAAGTGGCAAACTGTTTAACCC > NZ_CP009273/2982487‑2982641 | gTTCGATAAATATAAAACACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCAcc > 1:180949/1‑90 (MQ=255) ttCGATAAATATAAAACACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCg < 1:234085/90‑1 (MQ=255) aaaCACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTa > 1:94317/1‑90 (MQ=255) cGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTcccc < 1:174434/53‑1 (MQ=255) cGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTcccc > 2:174434/1‑53 (MQ=255) cGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCa > 2:213665/1‑90 (MQ=255) ggATACTGGATTCGGGGATTAACTGTAAAAACCATCCGTGGTTATACTCCCCTCTTGCAAAACCCTCACCGGGGATGATTGTTATGGCAt < 1:352695/90‑1 (MQ=255) aTTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATaaaa < 2:115445/90‑1 (MQ=255) tCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATAAAAAc > 2:71986/1‑90 (MQ=255) aaaaaaCATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCgg < 1:216024/46‑1 (MQ=255) aaaaaaCATCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCgg > 2:216024/1‑46 (MQ=255) tCCGTGGTTATACTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATAAAAACTATAACCAACATGAAGTGGCaaa < 1:99607/90‑1 (MQ=255) aCTCCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATAAAAACTATAACCAACATGAAGTGGCAAACTGTTTAAccc < 2:143351/90‑1 (MQ=255) | GTTCGATAAATATAAAACACGGATACTGGATTCGGGGATTAACTGTAAAAAACATCCGTGGTTATACTTCCCTCTTGCAAAATCCTCACCGGGGATGATTGTTATGGCATGCAATAAAAACTATAACCAACATGAAGTGGCAAACTGTTTAACCC > NZ_CP009273/2982487‑2982641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |