| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 386,045 | T→C | pseudogene (339/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 386,045 | 0 | T | C | 100.0% | 42.7 / NA | 14 | pseudogene (339/1527 nt) | BW25113_RS01915 | outer membrane autotransporter barrel domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/7); total (7/7) | |||||||||||
ACGATCTCAACCTATTATTTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGTTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGATATGATTTTTACACTGATGC > NZ_CP009273/385962‑386134 | aCGATCTCAACCTATTATTTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGAtt < 2:146080/90‑1 (MQ=255) aTCTCAACCTATTATTTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACt < 1:137157/90‑1 (MQ=255) attattTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTTCTAtgctgc > 1:174057/1‑90 (MQ=255) attTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTg < 2:309208/90‑1 (MQ=255) ttGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATACAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGc < 1:237616/90‑1 (MQ=255) cAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTNCNATNCTGNCTGGCGGNTATTATGATCGTTTTGa > 2:114002/1‑90 (MQ=255) gTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGAtt > 1:12056/1‑50 (MQ=255) gTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGAtt < 2:12056/50‑1 (MQ=255) tACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGc < 1:272398/90‑1 (MQ=255) gCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGAt < 2:225132/90‑1 (MQ=255) tCAGCTTGATATCAGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGGGGTTTTTATGATCGTTTTTATGCAGATGGtaa > 2:272398/1‑90 (MQ=255) aGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGa > 1:30353/1‑90 (MQ=255) aGTAATTCAGTGATTCACGGCTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGa > 1:41708/1‑90 (MQ=255) tCACGGCTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGATATGATTTTTacac > 2:372445/1‑90 (MQ=255) ttCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGATATGATTTTTACACTGATGc < 1:124785/90‑1 (MQ=255) | ACGATCTCAACCTATTATTTGAACCATGATTATGCAGACAGTACTGCTAATCAGCTTGATATCAGTAATTCAGTGATTCACGGTTCGATTACTTCTATGCTGCCTGGCGGTTATTATGATCGTTTTGATGCAGATGGTAATAATCTGGGTGGATATGATTTTTACACTGATGC > NZ_CP009273/385962‑386134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |